PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G20560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 114aa MW: 12143.1 Da PI: 8.3555 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 66.3 | 1.1e-20 | 63 | 114 | 2 | 53 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlq 53 a++k +++++h+kv+ R R +R+++ c ar+F+L+ eL +++d +tieWLl+ OPUNC03G20560.1 63 AVRKPPSKDRHSKVDCRSRCIRMPIICVARVFQLTCELSHKSDAQTIEWLLR 114 789***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.594 | 69 | 114 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.1E-17 | 69 | 113 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MRVEEGVGEV LVLVVGVSGD GVIVEGEASV VPFHVHSGGG ATAAALDKQL VPAVSKANGT 60 TLAVRKPPSK DRHSKVDCRS RCIRMPIICV ARVFQLTCEL SHKSDAQTIE WLLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 9e-75 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 9e-75 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 9e-75 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 9e-75 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629543.1 | 1e-36 | transcription factor TCP21 | ||||
TrEMBL | A0A0E0KF63 | 2e-76 | A0A0E0KF63_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G20560.1 | 3e-77 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23835 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 3e-27 | TCP family protein |