PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G19990.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 297aa    MW: 32600.3 Da    PI: 9.3131
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G19990.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32147203158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq+Rakle+++k   k+rkpylheSRh+hA++R+RgsgGrF
  OPUNC03G19990.2 147 EEPIFVNAKQYHAILRRRQTRAKLEAQNKA-VKGRKPYLHESRHRHAMKRARGSGGRF 203
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-35145206IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.75146206IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27148203IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-24149171IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860151171IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-24180203IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MIMLLQEMEN HPVQCMAKTN YDFLSRNGYP MKQLVQRNSD GDSSPTKSGQ SHQEASAVSD  60
SSLNGQHTSP QSVFVPSDIN NNDSCAEEDH GTKFDYNQPF ACVSYPFATD PYYGGILTGY  120
TSHAFVHPQI SGTANSRMPL PVDPSVEEPI FVNAKQYHAI LRRRQTRAKL EAQNKAVKGR  180
KPYLHESRHR HAMKRARGSG GRFLTKKELL EQQQQKPPPA SPSPSTGRAG ASGGAVVLGK  240
NLCPENSTSW SPSTPTGSEI SSISFGGGVL AHQEHISFAS SDRHPTMNQN HRVPIMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-23146208163NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187196RHRHAMKRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621350.0AK062135.1 Oryza sativa Japonica Group cDNA clone:001-045-F05, full insert sequence.
GenBankEU8470110.0EU847011.1 Oryza sativa Japonica Group clone KCS132A05 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631980.10.0nuclear transcription factor Y subunit A-4
RefseqXP_025879587.10.0nuclear transcription factor Y subunit A-4
RefseqXP_025879588.10.0nuclear transcription factor Y subunit A-4
TrEMBLA0A0E0KEZ10.0A0A0E0KEZ1_ORYPU; Uncharacterized protein
STRINGOPUNC03G19990.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.14e-37nuclear factor Y, subunit A6