PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G17850.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 417aa MW: 44646.6 Da PI: 5.72

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G17850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.5	5.5e-35	129	228	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+ OPUNC03G17850.1 129 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 222 79***********************9977778***********************************999************** PP DUF573 92 skkiWg 97 ++ iW+ OPUNC03G17850.1 223 ARGIWR 228 ***7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-30	130	227	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MTRSYDFFSP LGRSREARNN PNPLPNPNPD SSRDRSPSIS DPIPNPMLPT VVDDPSAAAA 60 VGAAASSSFP DADVYGNGDS DDIDFPSDPN HATTQAFSSA AGGAAGPGGG GGGGGGAGSG 120 GGGGERRPLF QRLWTEEDEI VILRAFAEFT AQRGTAFASH QYDTDPFYED MRRRLQLDFS 180 KSQLVEKLRR LKRKYRNCVD RLRATGQSFS FRSPHEQAIF EIARGIWRPT SDKHGRDDSD 240 DDALPDAAAV AVPVPVPVPA PANGEVKSPS STRAQRRGRR RRTADAAATT ADASEPPQPY 300 PPAPVKAEDA LPHFFPQAQG AVTTAHVHGV DPASAAANAE GGILAPLFKE MVRAMLTAGM 360 APPALEPPAL GIPMEGEKWR QQRILELEVY LRRIDLLQDQ VRTALEELKS TPPATTQ

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MTRSYDFFSP LGRSREARNN PNPLPNPNPD SSRDRSPSIS DPIPNPMLPT VVDDPSAAAA  60
VGAAASSSFP DADVYGNGDS DDIDFPSDPN HATTQAFSSA AGGAAGPGGG GGGGGGAGSG  120
GGGGERRPLF QRLWTEEDEI VILRAFAEFT AQRGTAFASH QYDTDPFYED MRRRLQLDFS  180
KSQLVEKLRR LKRKYRNCVD RLRATGQSFS FRSPHEQAIF EIARGIWRPT SDKHGRDDSD  240
DDALPDAAAV AVPVPVPVPA PANGEVKSPS STRAQRRGRR RRTADAAATT ADASEPPQPY  300
PPAPVKAEDA LPHFFPQAQG AVTTAHVHGV DPASAAANAE GGILAPLFKE MVRAMLTAGM  360
APPALEPPAL GIPMEGEKWR QQRILELEVY LRRIDLLQDQ VRTALEELKS TPPATTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC082644	0.0	AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632846.1	1e-160	probable transcription factor At3g04930
TrEMBL	A0A0E0KE64	0.0	A0A0E0KE64_ORYPU; Uncharacterized protein
STRING	OPUNC03G17850.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	4e-33	DNA-binding storekeeper protein-related transcriptional regulator