PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G17740.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 174aa MW: 19724 Da PI: 8.5098

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G17740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.5	6.4e-13	47	95	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eEd l+++ ++ G ++W+++a m +R++ qc++rw+ +l OPUNC03G17740.1 47 AWTPEEDACLARLAAENGFRHWRRVAGDMArsgRRRSPGQCRERWREHL 95 8*********************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.89	40	99	IPR017930	Myb domain
SMART	SM00717	1.9E-10	44	97	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.32E-16	47	117	IPR009057	Homeodomain-like
CDD	cd00167	1.85E-9	47	95	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-15	47	107	IPR009057	Homeodomain-like
Pfam	PF13921	2.2E-12	48	112	No hit	No description
PROSITE profile	PS50090	6.051	96	153	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	108	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MDDMDVEMES SHGATSVAFA DGGAASAASP SRLGNSRAVL RIRLSPAWTP EEDACLARLA 60 AENGFRHWRR VAGDMARSGR RRSPGQCRER WREHLARDVY HRPFTADDDA ELARLLLNRD 120 GGDGDGERSW KDISREAYCR TSRGMRRRWR ELQDSDAFLR KLWCPPLPPI QPSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC229925	0.0	AC229925.2 Oryza minuta clone OM__Ba0140H18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645625.1	2e-57	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A0E0KE48	1e-121	A0A0E0KE48_ORYPU; Uncharacterized protein
STRING	OPUNC03G17740.1	1e-122	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	4e-07	myb domain protein r1