PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G15460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 386aa    MW: 41540.9 Da    PI: 9.0267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G15460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.4e-5391421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s
  OPUNC03G15460.1   9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWDLPSKANYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHS 101
                      79****************************.89***************999999**************************************** PP

              NAM  95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +        +e vg+kk Lvfykgr pkg+kt+W+mheyrl
  OPUNC03G15460.1 102 SgggpravANESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 142
                      987777776677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-645176IPR003441NAC domain
PROSITE profilePS5100561.0799176IPR003441NAC domain
PfamPF023653.4E-2710142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKANY  60
GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGGPRAVA NESVGVKKAL  120
VFYKGRPPKG TKTNWIMHEY RLAAADAHAA NTYRPMKFRN TSMRLDDWVL CRIYKKSSHA  180
SPLAVPPLSD HEQEEPCAPE ENPPLYAPSS SSAASMILQG AAGGAFPSLH AAAAAATQRT  240
TTMQKIPSIS DLLNEYSLSQ LFDDGAAAVP LQEMARQPDH HHHHATLLGH PVMNHFIANN  300
SMVQLAQLDP SSSAAASTSA GAAEPPVTGK RKRSDGGEPT IQTAATAAKK PNGSCVGATF  360
QIGSALQGSS LGLGHQMLLH SNMGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-73918020172NAC domain-containing protein 19
3swm_B7e-73918020172NAC domain-containing protein 19
3swm_C7e-73918020172NAC domain-containing protein 19
3swm_D7e-73918020172NAC domain-containing protein 19
3swp_A7e-73918020172NAC domain-containing protein 19
3swp_B7e-73918020172NAC domain-containing protein 19
3swp_C7e-73918020172NAC domain-containing protein 19
3swp_D7e-73918020172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435140.0AK243514.1 Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence.
GenBankJN9823130.0JN982313.1 Oryza sativa Japonica Group NAC transcription factor 58 (NAC58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632401.10.0NAC transcription factor 47
SwissprotK4BNG71e-86NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0E0KD810.0A0A0E0KD81_ORYPU; Uncharacterized protein
STRINGOPUNC03G15460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-85NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]