PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G07840.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 266aa MW: 30080.7 Da PI: 8.6197 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.1 | 8.1e-19 | 15 | 109 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+ +++ l lp kfa+e g + ++ +l++ r W+vk+ + g ++l++GW+eF++a++L++g f+vF++dg f +v OPUNC03G07840.4 15 FFKII--LPGSSRTKLKLPDKFARELGDRELRDAKLQVAGAGRRLWDVKVFDDDVNGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TV 104 66777..556667779**********99999*******************65667777**************************998888..99 PP EEE-S CS B3 95 kvfrk 99 +vf++ OPUNC03G07840.4 105 TVFDE 109 99986 PP | |||||||
2 | B3 | 49 | 1.1e-15 | 167 | 239 | 14 | 87 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + l +p +f e+hg+ k+e +++l +g+ W+v+l++ r +++r+ ++ GW +F+ +ngL +gD++ F++ ++ OPUNC03G07840.4 167 QYLNVPVEFQEAHGYAKRE--KVVL-RMRGEPWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 239 45889********999876..4554.4599*******9876667777*************************6654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.846 | 13 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-19 | 13 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-20 | 13 | 108 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-21 | 14 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-15 | 15 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-16 | 15 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-25 | 150 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-16 | 151 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-11 | 152 | 235 | No hit | No description |
SMART | SM01019 | 6.5E-8 | 152 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 154 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-13 | 168 | 239 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MEEQMANLRL TDFEFFKIIL PGSSRTKLKL PDKFARELGD RELRDAKLQV AGAGRRLWDV 60 KVFDDDVNGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRNYRRGQ 120 HDPADSGSSS SSDGSDAATA VEGVGDVAAS QFAVTLRQCN LGDKQAQYLN VPVEFQEAHG 180 YAKREKVVLR MRGEPWTVRL KHSRRERGQR TAFRYGWHRF CVDNGLAVGD TCFFRVLREG 240 DLRRGGGGDD HVLRVAVRKA DGTTLE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070861 | 0.0 | AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628624.1 | 1e-156 | B3 domain-containing protein Os03g0212300 | ||||
Swissprot | Q10Q26 | 1e-157 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A0E0KAF5 | 0.0 | A0A0E0KAF5_ORYPU; Uncharacterized protein | ||||
STRING | ONIVA03G08950.1 | 1e-158 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-20 | B3 family protein |
Publications ? help Back to Top | |||
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