PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC03G05880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 651aa MW: 69367.5 Da PI: 5.2892 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5e-18 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GVr+++ +g+W+AeIrdp+e r++lg+f tae Aa a++aa++ l+g OPUNC03G05880.2 96 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 146 79********.**********866...3************************998 PP | |||||||
2 | AP2 | 59.6 | 7.4e-19 | 425 | 474 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f t+eeAa+a++ +++l+g OPUNC03G05880.2 425 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 474 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-21 | 96 | 155 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.93E-15 | 96 | 156 | No hit | No description |
Pfam | PF00847 | 7.3E-11 | 96 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-32 | 97 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 97 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.565 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 424 | 483 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 425 | 488 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-12 | 425 | 474 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 425 | 483 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.446 | 425 | 482 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.66E-28 | 425 | 484 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 426 | 437 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 448 | 464 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MCGGAILAKI IPTTPARRVT AAHVWPGGDG EKRRKVGGGG CDDDFEAAFE RFGRDDSEKE 60 EEEDEVVVAV GKKAAVRRRG GQVVAPAAAG RRARPSKYWG VRRRPWGKWA AEIRDPVEGV 120 RVWLGTFATA EAAAHAYDAA ARDLRGASAK LNFPSSSTAT TPRHRKRRPT AAPTATPNVV 180 VDLVDEEAEA SESSGASSAL PDFSWQGMSA SSDDGAAQPV LLDADTDHTI ELASACGAKK 240 RPRSEPHVTS DEVLPASFDS DNTAGGLLPF DDPFLFGDQF GYFNGDAFAS LMDGLFAAGE 300 ANVAGESVGL WSFGDDCLSA SKRSGRPKQR AMCGGAILAE FIPPPSRAAA AKRVTARHLW 360 PSGSKNGGGG KSKRQQRSFA DVDDFEAAFE QFDDDSDFDD AEEEDDEHFP SRSFVAASKK 420 KRGRHFRGIR QRPWGKWAAE IRDPHKGTRV WLGTFNTPEE AARAYDVEAR RLRGSKAKVN 480 FPATPAARPR RGGGGGAKTK QQCPPPPATA PAAPPRGLKR ELSPPETAGP FFTGSFVDLA 540 TAAPPQAMMT SSFTDSFATS ESGGSPAKKA RSSDDSSEGS VGGGDTLGFT DELEFDPFML 600 FQLPYSDGYE SIDSLFAAGD AVHDANSANT DMNGGVNLWS FDDFPIDSAL F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 93 | 482 | 1 | 63 | ATERF1 |
3gcc_A | 5e-21 | 93 | 482 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229740 | 0.0 | AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence. | |||
GenBank | AC229761 | 0.0 | AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630585.1 | 1e-128 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0E0K9Q4 | 0.0 | A0A0E0K9Q4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G05880.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 5e-28 | ERF family protein |