PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G34910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 638aa    MW: 70129.2 Da    PI: 4.2821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G34910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49161521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyW 83 
                      l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +          g+r+nrat +gyW
  OPUNC02G34910.1  16 LAPGFRFHPTDEELVSYYLRRRILGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGYW 108
                      579***************************.99***************5448999999***********99777777665567*********** PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+tgkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl
  OPUNC02G34910.1 109 KTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 152
                      ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5511170IPR003441NAC domain
PROSITE profilePS5100555.4816170IPR003441NAC domain
PfamPF023654.7E-2718152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD  60
LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR  120
GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQD LHVVCRIFQK NGSGPQNGAQ  180
YGAPYLEEDW EEDDDAIENT PASGAFAEMA AVTDTADEES TEEDGNFSLK TNDEPLQTQE  240
YQPEITPVKA QGSNEEINGG GYSCDVFSLD EILQEPENVC KNEEQNAIDD NFTIAELSGY  300
PRQDDGYVGE NGPVNWIDPS NGDNTNWPLR EYSTQNHVNG TLSADGFFDT VNGTNSYSGQ  360
QQVCPSDNQN LYLQDDGLTS SHQVGDNMPF YDASSSHKWV DGKDDYLNLN DLLYPPAENQ  420
PLFDAGDDLM AYFDATEDDF KFDIMGAEGS NSPLPDMPNF VQKDDNSNKF TLDGISNTAL  480
YGASSSGSHG NMYPDTAVPD MPMDDTVDKS FGKRLASMLG SIPAPPAMAS EFPPSTGKSV  540
VPLSAVNPSS SIRVTAGIIQ LGGITFTGST ERLQKNGDFN LLVSFTVEGD VSTKSIGFEP  600
DTQMSTTPMV LRSGMYLFFV SAMILMLSYK VGLCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4271526140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021730.0AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624689.10.0NAC domain-containing protein 78 isoform X1
TrEMBLA0A0E0K7210.0A0A0E0K721_ORYPU; Uncharacterized protein
STRINGOPUNC02G34910.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-59NAC domain containing protein 2