PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G27120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 417aa MW: 44468.4 Da PI: 7.074 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94.3 | 1e-29 | 159 | 212 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAa++G+h++DGCgEfm+s+g+ aaal CaACgCHR+FHRre++ OPUNC02G27120.1 159 TWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAACGCHRSFHRREPA 212 689**************************8887..99****************975 PP | |||||||
2 | Homeobox | 17.9 | 5.4e-06 | 311 | 367 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+ft+eq e++ e+ + + ++p+a++ +++g++ r+ kvW +N + OPUNC02G27120.1 311 KRFRTKFTAEQKERMREFAHrvgwRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 367 789***********987655888779****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.0E-26 | 160 | 211 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-26 | 161 | 210 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-9 | 161 | 188 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.485 | 162 | 210 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.06E-19 | 303 | 368 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-30 | 303 | 370 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-26 | 310 | 366 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00319 | 311 | 364 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEYKRSSHVE EEEEEEEEEE EDEEEEDEEE QGHHQYTTAA AVAAATQQLH PQVLGSSASS 60 PSMDSAAFSR PLLPPNLSLV SPSPPPPPPG GSYLHAAHHH GQGRRVETPG GESQHQLQRH 120 HEPARNGVLG GGAGAHPAST LALVGGPRGG EGAAGEAPTW RYRECLKNHA ARMGAHVLDG 180 CGEFMSSPGD GAAALACAAC GCHRSFHRRE PAVVAPASLS LSPAAGVVSL SPSATPTGAN 240 SSRLMPLLLA PPHMQKRPPV LPVSPASAPA ALAESSSEEL RPPPPLPSSH PHAHAAAVVA 300 SASAPPGPSK KRFRTKFTAE QKERMREFAH RVGWRIHKPD AAAVDAFCAQ VGVSRRVLKV 360 WMHNNKHLAK TPPSPTSQPP PPLHHDPSPP PPPHHHHHHH HHHPPQHHQQ QQQQHDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-22 | 309 | 367 | 16 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF480496 | 0.0 | AF480496.1 Oryza sativa clone BAC 49D11, complete sequence. | |||
GenBank | AP005323 | 0.0 | AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05. | |||
GenBank | AP005844 | 0.0 | AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626824.1 | 1e-154 | zinc-finger homeodomain protein 7 | ||||
Swissprot | Q8S3Q9 | 1e-155 | ZHD7_ORYSJ; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A0E0K469 | 0.0 | A0A0E0K469_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G27120.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13491 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-22 | homeobox protein 22 |