PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G23730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 616aa    MW: 66721.9 Da    PI: 4.6499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G23730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2983167187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s  +++f+qlea
  OPUNC02G23730.1  83 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 167
                      8*********************************************************************866665..*******85 PP
2trihelix108.54.4e-34380465187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+ev+aLi++r e+ee++++   k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  OPUNC02G23730.1 380 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYHRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 465
                      8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1276140IPR017877Myb-like domain
SMARTSM007170.1980142IPR001005SANT/Myb domain
CDDcd122034.66E-2782147No hitNo description
PfamPF138375.6E-2182168No hitNo description
SMARTSM007171.5E-5377439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-4379436IPR009057Homeodomain-like
PROSITE profilePS500907.689379437IPR017877Myb-like domain
CDDcd122031.25E-25379444No hitNo description
PfamPF138371.7E-22380466No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MQHPQGAGEP TMDAFSLPPV TTQAPASSDV LLPTQPQPAA PEEFQAAAAA AAATAVNSND  60
DDMMMVDDAV AGSVGGSGSS GNRWPREETL ALIRIRSEMD AAFRNATLKA PVWEELSRRL  120
AELGYQRSGK KCKEKFENVD KYYKRTKEGR TGRQDGKSYR FFSQLEALHA AAPPPHQQKG  180
GMPVDDPQPL AMARMMLPAA ADLGFLSMSS DSESDDESDE EEEEAAPDGG REVLGDDEEE  240
DGEGSSSSSS RKLMAMFEGM MRQVTEKQDA MQRVFLETLE KWEAERTERE EAWRRKEVAR  300
INREREQLSK ERAAAASRDA ALIAFLQRVG GAGEPVKLSP HHDAAAAGLQ LVPVPAPRAK  360
AEDVWAAAGG DGSGTTAPSR WPKEEVQALI DLRMEKEEQY NDMGPKGPLW EEIAAGMQRI  420
GYHRSAKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HQLDAIYRKK HFAGRASAAS  480
GVTIAASHSS LAIVTVSEQD NPSQRELEGK SSNDIGIVQL AVPLLVHNAP DKKVEGSEGI  540
VAETDITAAE ETDSDEMGGN YTDDGDDDDK MQYKIEFQKP TAGGGGGGGD DAPAAATTAA  600
ATSSAPASNT SFLAVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117420.0AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878530.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A0E0K3010.0A0A0E0K301_ORYPU; Uncharacterized protein
STRINGOPUNC02G23730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-49Trihelix family protein