PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G20840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 943aa    MW: 106001 Da    PI: 9.4798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G20840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-112843611497
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +l +p   a +++   ++   + led++g+s +++l  +  +g+  + +GW++Fv+++ +k gDf++F+++ +s+f   v+vf
  OPUNC02G20840.1 284 ELLFIPPAVAPSFKDLINC--HVYLEDSEGKSSKIRL--SVVDGSLAFYEGWNSFVSEHCIKWGDFLLFEYTPESTF--SVRVF 361
                      5688888888888544345..6***************..8888999999*********************9876777..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.068271364IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-18273366IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-15273365IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-10274361No hitNo description
SMARTSM010195.7E-6274364IPR003340B3 DNA binding domain
PfamPF023624.9E-9283360IPR003340B3 DNA binding domain
SMARTSM010190.019850942IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-11853942IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-11854942IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-11856942No hitNo description
PfamPF023622.0E-7859939IPR003340B3 DNA binding domain
PROSITE profilePS508639.855881943IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    Send to blast
MDGAVQGQGC AGRLRSFEKM KKKNQNCSDD MRNGDDKEKK KNRKCSYDMK KSMRNDADEE  60
KRKRKRSDDM KKNVRNDASK KEMPNGDWRK NRMAGSDAEQ RGKKMLNGDK KAKSRKVPTP  120
FFEKLRKSQM LRMSSQNGEQ KMKSDGDSYK KTVPLSVNKG KMEKDGTDKR TLPNAPVAKE  180
RKMRTSDSVE MKMKKKKQDA SFVHPDERTT QTFSTKNKEK KRKAPSTPLK REQKEREASS  240
DNKKETKKAC IVAKGDEKKN CRDGKKKRKA SFAFFKFVRN EFEELLFIPP AVAPSFKDLI  300
NCHVYLEDSE GKSSKIRLSV VDGSLAFYEG WNSFVSEHCI KWGDFLLFEY TPESTFSVRV  360
FGMDSCERLH FNVESGGKGA VKKRKERHTL SDDLVPHYNG QYQDSEDIHD GPNVSGESPR  420
SKEPKITVDT EICTSNLVAK SINAASETQD SERVESGIGY GSLGALDNKV RNLSNGECDT  480
RSDSVLCIQK KTRRSEVIII SDEAYSTQVD EDTMEQRTPS EASETHHVTI NTQKDLERVA  540
DGVWCESSVA LNNKMGNLIL GERKNKNVSP VCSTEKTNGS ETTPTTGAIP LTQENIDTVK  600
LNTFSCLEED RSTTRESELA AAIPTTSETH DSDEDLGQKH QRNTVQVQSI IAVDKYSNDS  660
EMNISGKVSR IYEAPAGTRC LEKWKKGIVS GRAALDYIGQ VRPEKTQKAG EKLVGNYGAM  720
GENPVDLRLE SDVTGTCLKP ILNIPIEELA ILDSVSVSKC GRSRTEVNHL FNQKGATVQL  780
QTKKEPLKPT GSSGNRQGNK IPVVNRVLTP QSDFQIPQQK NGNFTCCATP VSLLPAKAEL  840
LELDDYSLQF CISSTIQKWI ELPKSLPITY RQKGRHDRNV VILKDPMKRL WPVFYHDKPI  900
FVGFTAGWKT FATANNLQAG DVCKVVKELD EDEPAFQVHI TRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219900.0AK121990.1 Oryza sativa Japonica Group cDNA clone:J033109I02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624189.10.0B3 domain-containing protein Os02g0598200
RefseqXP_015624190.10.0B3 domain-containing protein Os02g0598200
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLA0A0E0K1Z40.0A0A0E0K1Z4_ORYPU; Uncharacterized protein
STRINGOPUNC02G20840.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]