PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G17580.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 402aa MW: 45212.6 Da PI: 9.3715

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G17580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.4	5.7e-29	111	200	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ YA ++GFsvr+++ +ks+r+geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ +k+ev +e +HnH+l+ OPUNC02G17580.1 111 EFYRYYAWKLGFSVRREYANKSRRTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdASKYEVCAFEAQHNHPLF 200 6*****************************************999.******************9989*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-26	111	200	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MTRPIYRSRT TATEWDNDTR RQRGSQAAAS PALRLAAPRR PLPPAMSSPS PEPPPNPTPV 60 PAPPPPPSAP SGNTTVEDSE ADPCIPRLQA SRGDYTPWLE QEFVSEHEAY EFYRYYAWKL 120 GFSVRREYAN KSRRTGEITS RKFVCSREGF KAPDKRTNHT RTPQPDTRTG CHANLVIRRK 180 NDASKYEVCA FEAQHNHPLF IPSCANPLQR KLSDVQSSDA DNSGSEFKAC INDYEEEVEL 240 FTAWEAMINK YNLRSNRRKK KGRNAKSQRK SCIEKGLQKI KKVQPEQSPM QYTMLDATQP 300 GNVLFQGLDI SNPFPMGQLN YGGVQPQPGL CPSLPTVSRE LGFAAYLSQP SSNNQHNQQT 360 GPVEDQINFS NSYQSVIEAT KNSQIPGYIH QQHVLAMLRT TS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MTRPIYRSRT TATEWDNDTR RQRGSQAAAS PALRLAAPRR PLPPAMSSPS PEPPPNPTPV  60
PAPPPPPSAP SGNTTVEDSE ADPCIPRLQA SRGDYTPWLE QEFVSEHEAY EFYRYYAWKL  120
GFSVRREYAN KSRRTGEITS RKFVCSREGF KAPDKRTNHT RTPQPDTRTG CHANLVIRRK  180
NDASKYEVCA FEAQHNHPLF IPSCANPLQR KLSDVQSSDA DNSGSEFKAC INDYEEEVEL  240
FTAWEAMINK YNLRSNRRKK KGRNAKSQRK SCIEKGLQKI KKVQPEQSPM QYTMLDATQP  300
GNVLFQGLDI SNPFPMGQLN YGGVQPQPGL CPSLPTVSRE LGFAAYLSQP SSNNQHNQQT  360
GPVEDQINFS NSYQSVIEAT KNSQIPGYIH QQHVLAMLRT TS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066798	0.0	AK066798.1 Oryza sativa Japonica Group cDNA clone:J013075G03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627310.1	5e-96	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_015627311.1	4e-96	protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBL	A0A0E0K0T9	0.0	A0A0E0K0T9_ORYPU; Uncharacterized protein
STRING	OPUNC02G17580.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-20	FAR1 family protein