PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC02G15530.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 14091.9 Da PI: 9.0383 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.3 | 1.6e-12 | 2 | 42 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ OPUNC02G15530.4 2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 42 9**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-6 | 2 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-8 | 2 | 45 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-4 | 2 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-7 | 3 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MRGVYFKNMK WQAAIKVDKK QIHLGTVGTQ EEAARLYDRA AFMCGREPNF ELSEEEKKEL 60 KKYTWKDFLD KTRDTITSKK QRKVGLIRRN KTDLLIGQSD GDTEMINGGG SSHSEDGDAE 120 TSAS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK067156 | 1e-174 | AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence. | |||
GenBank | CT829643 | 1e-174 | CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence. | |||
GenBank | CT841725 | 1e-174 | CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952530.1 | 4e-76 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_015626905.1 | 4e-76 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_015626906.1 | 4e-76 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 4e-42 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0E0K023 | 3e-86 | A0A0E0K023_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0K025 | 9e-87 | A0A0E0K025_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G15530.1 | 5e-87 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13040.2 | 4e-38 | ERF family protein |