PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G06600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 285aa    MW: 31791.5 Da    PI: 8.0079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G06600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1621115998
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliy...rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        +++  l lp +fa+e + +++e ++ +l+       r W+vk+     ++ +++ ++l++GW +F++a+gL++g  +vF++dg s f  +v+
  OPUNC02G06600.1  21 PGSSRTKLKLPDEFARELEAEERELRDAKLRVAGAgrrRLWDVKVVDgdgDGDDDSgVYLGRGWMRFARAHGLRDGHLLVFRYDGASVF--TVT 112
                      44556669**********7676766666666633335699*****556654444448****************************9999..888 PP

                      EE- CS
               B3  96 vfr 98 
                      vf+
  OPUNC02G06600.1 113 VFD 115
                      887 PP
2B355.69.8e-18172264188
                      EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-S CS
               B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFk..ldg 86 
                      f+ +l +s+ +k+  + l +p +f e+hg+  +e  +++    +grsW+v+l++    r +++r+vl+ GW +F+ +ngL +gD++ F+  ++g
  OPUNC02G06600.1 172 FVVTLRQSNLGKKqaQYLNVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgkRPRRERTVLRYGWHRFCADNGLAVGDTCFFRelRSG 262
                      5566666777776667799*********999665..455.45599*******998887777788************************953334 PP

                      SS CS
               B3  87 rs 88 
                      ++
  OPUNC02G06600.1 263 DN 264
                      44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-1512115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-1813115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.36613117IPR003340B3 DNA binding domain
SMARTSM010192.6E-1215117IPR003340B3 DNA binding domain
PfamPF023622.2E-1222115IPR003340B3 DNA binding domain
CDDcd100173.94E-1079115No hitNo description
Gene3DG3DSA:2.40.330.107.3E-28168278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-18170262IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-12172278IPR003340B3 DNA binding domain
CDDcd100176.65E-15172257No hitNo description
PfamPF023625.9E-15172264IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169174278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEEQMTNLRL ANFEFFTIIQ PGSSRTKLKL PDEFARELEA EERELRDAKL RVAGAGRRRL  60
WDVKVVDGDG DGDDDSGVYL GRGWMRFARA HGLRDGHLLV FRYDGASVFT VTVFDDGTMC  120
RRAYHDAAGN ITSPASERVA RTDMTWLTCA GSGSSSDDDG EGGGDTAATS QFVVTLRQSN  180
LGKKQAQYLN VPVEFQEAHG YAAREKVVLR MRGRSWTVRL KHTKGKRPRR ERTVLRYGWH  240
RFCADNGLAV GDTCFFRELR SGDNDGDHVL SVTVHKADGG GNPLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231RPRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-135CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-103B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-104Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0JWV60.0A0A0E0JWV6_ORYPU; Uncharacterized protein
STRINGOPUNC02G06600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.19e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]