PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G44220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24248.1 Da PI: 6.9696 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.8 | 1.8e-15 | 44 | 96 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + rWv+e+r+p + +r++lg++ t+e+Aa+a++ a+ +l+ge OPUNC01G44220.1 44 PVYRGVRARAGGSRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGE 96 68********9999****9999.....446**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-12 | 44 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-16 | 45 | 106 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.995 | 45 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-25 | 45 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-24 | 45 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.36E-20 | 46 | 106 | No hit | No description |
PRINTS | PR00367 | 6.1E-6 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-6 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDTEDTSSAS SSSLSPPSSP SGGHHRLPPK RRAGRKKFRE TRHPVYRGVR ARAGGSRWVC 60 EVREPQAQAR IWLGTYPTPE MAARAHDVAA IALRGEGGAE LNFPDSPSTL PRARTASPED 120 IRLAAAQAAE LYRRPPPPTT TTTSHAPPPP LALPDPHEGT SGAATTSGRP AAVFVDEDAI 180 FDMPGLINDM ARGMLLTPPA MGRLDWAAVD DDDHYHMDYK LWMD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LK931454 | 0.0 | LK931454.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330639. | |||
GenBank | LK931455 | 0.0 | LK931455.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330642. | |||
GenBank | LK931456 | 0.0 | LK931456.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336680. | |||
GenBank | LK931457 | 0.0 | LK931457.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336683. | |||
GenBank | LK931458 | 0.0 | LK931458.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336689. | |||
GenBank | LK931459 | 0.0 | LK931459.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336693. | |||
GenBank | LK931464 | 0.0 | LK931464.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336676. | |||
GenBank | LK931465 | 0.0 | LK931465.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336684. | |||
GenBank | LK931466 | 0.0 | LK931466.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336715. | |||
GenBank | LK931467 | 0.0 | LK931467.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330629. | |||
GenBank | LK931470 | 0.0 | LK931470.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336708. | |||
GenBank | LK931471 | 0.0 | LK931471.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336721. | |||
GenBank | LK931472 | 0.0 | LK931472.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336728. | |||
GenBank | LK931473 | 0.0 | LK931473.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336727. | |||
GenBank | LK931475 | 0.0 | LK931475.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336687. | |||
GenBank | LK931476 | 0.0 | LK931476.1 Oryza rufipogon OsDREB1F gene for transcription factor, allele O.ruf336723. | |||
GenBank | LK931477 | 0.0 | LK931477.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele N22. | |||
GenBank | LK931478 | 0.0 | LK931478.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele IR64. | |||
GenBank | LK931479 | 0.0 | LK931479.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele APO. | |||
GenBank | LK931480 | 0.0 | LK931480.1 Oryza sativa Indica Group OsDREB1F gene for transcription factor, allele SWARNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645845.1 | 7e-96 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 6e-97 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 6e-97 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A0E0JU58 | 1e-159 | A0A0E0JU58_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G44220.1 | 1e-160 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-46 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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