PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G41290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 25091.5 Da PI: 8.9593 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.2 | 8.4e-33 | 24 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkev 92 lp GfrF+Ptdeel+ +yL++kv + +l++ +vi+ +d+ +++PwdL ++ e yfF+k +++ + g +r a +g+W+a+gk+k v OPUNC01G41290.1 24 LPIGFRFRPTDEELLLHYLRRKVMSCPLPA-DVIPVADLARTHPWDLL--PGDGDGERYFFHKPATSCWRrGGGGSRaAGGDGVWRASGKEKLV 114 699***************************.99**************4..34567799****99988764378888846679***********9 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++ vg k+tLvf+ ++ g +tdW mheyrl OPUNC01G41290.1 115 VAPrCKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 148 99867889**********...567889********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-43 | 18 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.687 | 24 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-21 | 25 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAVVTAEAAG GGGGGGYRMV QAGLPIGFRF RPTDEELLLH YLRRKVMSCP LPADVIPVAD 60 LARTHPWDLL PGDGDGERYF FHKPATSCWR RGGGGSRAAG GDGVWRASGK EKLVVAPRCK 120 RPVGAKRTLV FFRRGGARTD WAMHEYRLLP AALHAAADDH PPEANDWVVC RIFKKTTPAH 180 RRSPPCIRGT PRRRAAAAAD DMPSSPSSCV TDGGDMGEEG EESSSCSVVA SNCP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-26 | 19 | 181 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 19 | 181 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067450 | 0.0 | AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence. | |||
GenBank | AK068446 | 0.0 | AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence. | |||
GenBank | AK288942 | 0.0 | AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence. | |||
GenBank | CT829591 | 0.0 | CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence. | |||
GenBank | CT829592 | 0.0 | CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence. | |||
GenBank | CU406744 | 0.0 | CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence. | |||
GenBank | GU120351 | 0.0 | GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627804.1 | 6e-91 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A0E0JT05 | 1e-168 | A0A0E0JT05_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G41290.1 | 1e-169 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-34 | NAC domain containing protein 83 |