PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1367aa    MW: 151310 Da    PI: 8.7481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001112741296323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       Cp   Cgk F ++ +L +H ++H
  OPUNC01G39910.1 1274 CPvkGCGKKFFSHKYLLQHRKVH 1296
                       9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.3E-14105146IPR003349JmjN domain
PROSITE profilePS5118313.98106147IPR003349JmjN domain
PfamPF023753.8E-13107140IPR003349JmjN domain
SMARTSM005581.4E-51280449IPR003347JmjC domain
PROSITE profilePS5118437.779283449IPR003347JmjC domain
SuperFamilySSF511971.13E-27295451No hitNo description
PfamPF023733.6E-39313432IPR003347JmjC domain
SMARTSM003551712491271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61212721301IPR007087Zinc finger, C2H2
SMARTSM003550.6212721296IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012741296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-512741300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-1012891330No hitNo description
Gene3DG3DSA:3.30.160.601.6E-813011326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002913021326IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.32313021331IPR007087Zinc finger, C2H2
PROSITE patternPS00028013041326IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-713201354No hitNo description
Gene3DG3DSA:3.30.160.609.1E-913271355IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.713321358IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.61613321363IPR007087Zinc finger, C2H2
PROSITE patternPS00028013341358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1367 aa     Download sequence    Send to blast
MCSYRANVQR NHRRPGTVCS ALDERSYTLP LPPIPFTSLP SHFLSLPRDQ DQPNPCFSLK  60
TSSLSPPNAR PLCGGIPYSP AMRSSPPPAA TAAEPVPPWL KSLPVAPEFR PTAAEFADPV  120
AYILKIEAAA APYGICKVVP PFPPPPKKAT LSNLSRSFAA LHPDDRSPSF PTRHQQVGLC  180
PRRTRPGLKP VWRSSHRYTL PQFESKAGAT RKSLLAGLNV PASKQLTPLD HEVLFWRASA  240
GRPIVVEYGS DMSGSGFSPC AAQPQQQQQH QQSTARVASH VGETAWNMRG VARSPGSLLR  300
FMPDEVPGVT TPMLYVGMMF SWFAWHVEDH DLHSLNYMHL GAAKTWYGVP RDAALAFEEV  360
VREHGYGGEV NPLETFATLG QKTTVMSPEV LVESGIPCCR LVQNAGEFVV TFPGSYHCGF  420
SHGFNCAEAS NIATPEWLRI AKEAAIRRAS INRPPMVSHY QLLYELALSM RFREPSNGEM  480
ETRSSRIKEK KKCEGEQLVK KMFIRNVIED NELLSRLLND RSFCIILPAN AHDSPSLSTL  540
RSTNQSNMDS RISHNLCSRE EAPEASGCLS LNRIGDTRNC ISSDTHNMEG DKEDILSATG  600
LLDQGLLSCV TCGILSFSCV AVLKPRDCTA RYLMSADSNS INNQLSISGG SILADALTNE  660
RNGIISRPYA EHCRNEIMSD DAEIDRNSAL DLLAFAHGGQ SDSEEDPLEK ILKIAHGINK  720
SQPTSSNNVG CVGTKLSSSS TECQERPSSQ NAHCNGSSVI SNGPKGVRTR NKYQLKMVLS  780
EGFQAKDMYS AKEKKVQSEP SSSKGAVNET VDVRGTENDV GCKSTTISVS EHRGSTKDMY  840
SVKEKKVQSE PSSLKGTVKE TVDVSGTEND VRCKSTTISV SEHRGSTPMT NSLAASIMKP  900
DKDSSRMHVF CLEHAIEVEK QLHAIGGSHI MLLCRPEYPK IEAEARLLGE EMGLVYDWKD  960
IHFKEANMED RQKIQEVVRD EEAIPTSSDW AVKLGINLYY SANLAKSPLY NKQMPYNRVI  1020
YRAFGCDFPN DSPVKLNTCE RRQSHQKKIV VAGRWCGKVW MSKQVHPYLA HRVESQEAEE  1080
ADRICSYHFD EKHKAEPVEN SGRVEASKRK SSSLTDVTES SNRRGEIPGE ETNTKRPKHS  1140
QEGNLRALES AAEVVAPSPA GTVLRISSRI ANRANKLKSR MEEEDVPSSR PKSNVKEKSS  1200
HASGQKPNVQ EANANSASHL RAIAPKQKTE AGAKKPTRTA KPPKQAVEYS CDIEGCSMSF  1260
RTKRDLSLHK SDICPVKGCG KKFFSHKYLL QHRKVHTDDR PLTCPWEGCN MAFKWPWART  1320
EHLRVHTGDR PYVCHEPGCA QTFRFVSDFS RHKRKTGHSA KKKKAKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-72994708353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-72994708353Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621377.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0JSH20.0A0A0E0JSH2_ORYPU; Uncharacterized protein
STRINGOPUNC01G39910.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]