PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 361aa    MW: 38794.1 Da    PI: 6.4385
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.25.9e-10961150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50
                     k ien+ +r+ t+ +Rr g+  K +   +LC++e+ +i ++++   g++ +++
  OPUNC01G39870.1  9 KLIENEKKRKATLKNRRDGLKQKVSQFATLCGVEAFLICVAPDvagGEVTTWP 61
                     569**************************************987778999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-14179IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.344149IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-6162IPR002100Transcription factor, MADS-box
CDDcd002667.26E-15364No hitNo description
PfamPF003192.2E-121160IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPRTKLVLKL IENEKKRKAT LKNRRDGLKQ KVSQFATLCG VEAFLICVAP DVAGGEVTTW  60
PPDRTTVLQL IAKLRTTPPE KIRQQQNSQI LLREDLAKQQ RALLKVQTCG ADEVLTSWHC  120
SFDHLSLDGL NALHDTLSET LDRAHRRMAA LGHVHDAAAS SSAFSVPAPA THAVALPDNA  180
FDFPFAPSNT GSVVGAHYFY PLHDTLPLPL PLPQQVPGQP PPCIAYQMPP PCLAYQMPPP  240
PPSLAAAPFD QCMSGTGFMD SNPYATHIMH GGSAAAGLLD DHGQIFSTGA GYDDDILGHG  300
FAFAAGTGYD LDPRMTNADV WPMNTLNIIP NDGIGFQLQN DLKGIFSGGS SGSNLQGGFQ  360
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033800.0AP003380.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0497A05.
GenBankAP0065310.0AP006531.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1417F08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JSG40.0A0A0E0JSG4_ORYPU; Uncharacterized protein
STRINGOPUNC01G39870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.18e-16AGAMOUS-like 82