PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G39400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 709aa MW: 73063.6 Da PI: 7.1115 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.7e-11 | 281 | 337 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OPUNC01G39400.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 337 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.7 | 8.1e-15 | 380 | 431 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OPUNC01G39400.1 380 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 431 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-9 | 281 | 337 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-15 | 281 | 347 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.95E-17 | 281 | 347 | No hit | No description |
PROSITE profile | PS51032 | 17.385 | 282 | 345 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-12 | 282 | 346 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-23 | 282 | 351 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 283 | 294 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 380 | 441 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.99E-23 | 380 | 441 | No hit | No description |
Pfam | PF00847 | 1.0E-9 | 380 | 431 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-18 | 381 | 440 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 381 | 439 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 381 | 445 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 421 | 441 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MATVNNWLAF SLSPQDQLPP SQANSTLISA AAATTTGDSS TGDVCFNIPQ DWSMRGSELS 60 ALVAEPKLED FLGGISFSEQ QHHGGKGGAC GVIPSSAAAA AACYASSGSS VGYLYPPSSS 120 SLQFADSVMV ATSSSPVVHD GVTGGMVSAA AAATGNGGIG LSMIKNWLRS QPAPAAPQPA 180 HGAHASAQAL SLSMNMAGHG HAQGGGAGGM ALLAGAGERG RVPAESLSTS AGRKENEQGS 240 DSAGAVVAVG SESCGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW 300 DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPVNNYE KELEEMKHMT 360 RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE 420 AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SAALPVGSAA KRLKDAEAAA VAGYDIGRMA 480 SQLGDGAYAA AAAHYGHHHS AAAWPTIAFQ AAPTTPHHAA AAAAGLYHPY AQPLRGWCKQ 540 EQDHAVIAAA HSLQELHHLN LGAGAGAHDF FSAAAAAAQA MHQQQQHGLG SIDNNASLEH 600 STGSNSVVYN GDGGVAGGGY MMPMSAASGT ATAVVSSHDQ GGLRDHGGDG GKHVQMGYDS 660 YLVGADAYGG AGRMPSWAMT PASAPAATSS SDMTGVCHGA QLFSVWNDT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240892 | 0.0 | AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634444.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 | ||||
TrEMBL | A0A0E0JSA3 | 0.0 | A0A0E0JSA3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G39400.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-115 | AINTEGUMENTA-like 5 |