PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G36980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 28234.4 Da PI: 5.4093 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.6 | 1.6e-42 | 8 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L + + +e + w++F++r++++a+g r++r+t sgyWka g+ OPUNC01G36980.1 8 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlGAGGEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTP 101 59***************************99***************8545654433347779******************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++ +g+kkt+vfy+grap+g+kt+W m+eyr+ OPUNC01G36980.1 102 GVVYSADRRPIGMKKTMVFYRGRAPSGTKTTWKMNEYRA 140 *************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.695 | 7 | 178 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-46 | 8 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-24 | 9 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MADGGRRAPG FRFYPTEEEL ICFYLRNKLD GLRDDIERVI PVFDVYSVDP LQLSEIHHEM 60 LGAGGEGEPW FYFCPRQERE ARGGRPSRTT PSGYWKAAGT PGVVYSADRR PIGMKKTMVF 120 YRGRAPSGTK TTWKMNEYRA FHYPDASSAA ASSASAAAPP SLPPQLRSEF SLCRLYTRSG 180 GIRQFDRRPL AGGGDENPGP SMAAAAASPE ENDGSGSSMQ QQQLELMDHG GAVDPDWDQW 240 DDVATLTALL YWPRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-28 | 9 | 139 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-28 | 9 | 139 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-28 | 9 | 139 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-28 | 9 | 139 | 19 | 141 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swm_B | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swm_C | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swm_D | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swp_A | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swp_B | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swp_C | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
3swp_D | 8e-28 | 9 | 142 | 22 | 147 | NAC domain-containing protein 19 |
4dul_A | 7e-28 | 9 | 139 | 19 | 141 | NAC domain-containing protein 19 |
4dul_B | 7e-28 | 9 | 139 | 19 | 141 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 0.0 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632691.1 | 1e-158 | NAC domain-containing protein 90 isoform X2 | ||||
Swissprot | Q9FMR3 | 1e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0E0JRD8 | 0.0 | A0A0E0JRD8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G36980.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-65 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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