PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G34540.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 27383.1 Da PI: 8.2334 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.5e-40 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael OPUNC01G34540.2 61 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAEL 154 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e OPUNC01G34540.2 155 EAVRTE 160 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.133 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-40 | 61 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSTERERLDE IGKKIKREPD TTGVVVAAVA GTGTGTGTAT PIDHRVPHRL GLGGAVNTVT 60 PCAACKLLRR RCAQECPFAP YFSPHEPHKF AAVHKVFGAS NVSKMLLEVG EAERADAASS 120 LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELEAVRTE IFKHRYRQAG AAAGATGLMD 180 DVQVHVTAGF AAPPPPSMHA RDVVSVADAG GQELAGAPVI SSASPPVYPA GQPSTSTTDY 240 SSFNTNLRWT KKLPVRTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 61 | 164 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 61 | 164 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121919 | 0.0 | AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636038.1 | 1e-145 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 4e-68 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A0E0JQG2 | 0.0 | A0A0E0JQG2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G34540.1 | 1e-180 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 8e-69 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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