PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G33650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 357aa    MW: 40088.4 Da    PI: 6.625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G33650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.24.3e-29581933127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                      pG+rF P+d el+v++L++k++g++l+    ++ +d+y+ +P++L +++   +e +wy Fs+r++ky++gkr++r + ksg+Wk+t k+++vl+
  OPUNC01G33650.1  58 PGIRFVPSDIELIVDFLRPKLRGEQLPS--YMHVCDVYSDHPKELTSMLGPsREGNWYMFSPRNRKYNKGKRPSRsTGKSGFWKSTTKTEPVLD 149
                      9************************988..799************9544431566********************55569************99 PP

              NAM  95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                         ++ ++g k  L+++         k +++++ kt W m e+ 
  OPUNC01G33650.1 150 VlsDDMVIGYKACLTYHeydesmstpKLKKENAIKTPWKMWEFV 193
                      8778899**********88887777668999999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-3856221IPR003441NAC domain
PROSITE profilePS5100535.92756221IPR003441NAC domain
PfamPF023653.1E-1558193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MPGSAWPEEE NLEPLPLPWP QEHLPLQNQE QLLPASSQEQ LLPASSQEEE KHRYLGVPGI  60
RFVPSDIELI VDFLRPKLRG EQLPSYMHVC DVYSDHPKEL TSMLGPSREG NWYMFSPRNR  120
KYNKGKRPSR STGKSGFWKS TTKTEPVLDV LSDDMVIGYK ACLTYHEYDE SMSTPKLKKE  180
NAIKTPWKMW EFVCSNSNRP FDVEKEPMRL NDWVLCKVTN KDNKVTTKKF KPRNKKPKKL  240
LQEEQPQNQG ITIRHPSESG SASSSQQEMP GSSVPGAGGD IAVVAVTVNP MPLQMIPPCG  300
SSLNPMPLQM IPPCGSSWNC FSTGVTTDGI VMDNSTGVDS YGSEDGSVNF QNNTLYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-185822417171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032471e-125AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0032601e-125AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0149571e-125AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-125CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.11e-127protein ATAF2
TrEMBLA0A0E0JQ350.0A0A0E0JQ35_ORYPU; Uncharacterized protein
STRINGOPUNC01G33650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-21NAC family protein