PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G30260.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 722aa MW: 78829.7 Da PI: 7.6326 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.4e-24 | 191 | 292 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L gD v+F + OPUNC01G30260.2 191 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhkQLR--PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVLGDAVLFL--RG 280 99**************************99865444..4669************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ OPUNC01G30260.2 281 DDGELRLGVRRA 292 89999****997 PP | |||||||
2 | Auxin_resp | 113.3 | 2.2e-37 | 317 | 397 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF++ YnPra++seFvv+++k++k+++++v++GmRfk++fe+ed++err +G+++gvs++dp+rWp+SkWrsL OPUNC01G30260.2 317 VADSLKHGSVFHISYNPRATASEFVVPYWKFVKSFSHPVCIGMRFKFHFESEDVNERR-AGMIAGVSEVDPIRWPGSKWRSL 397 578899****************************************************.9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.94E-47 | 175 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-38 | 186 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.71E-23 | 189 | 291 | No hit | No description |
PROSITE profile | PS50863 | 13.38 | 191 | 293 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-24 | 191 | 293 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-22 | 191 | 292 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-30 | 318 | 397 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MASSASSSSS PSSRPPLMAL PSFYRPPWPS ERGGEQRATD CWAGSPAAGG GRARVTTMGI 60 DLNNTASGGE EDAPAPAPVC RELWHACAGP VVSLPRRGSV VVYLPQGHLA AAGAGGGIRG 120 EVAVALPPHV ACRVVDVELC ADAATDEVYA RLALVAECEV FERNLHGGGI EREDDMEDGD 180 EERKSRMLHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DHKQLRPSQE LVAKDLHGAK 240 WRFRHIYRGQ PRRHLLTTGW SSFVNKKKLV LGDAVLFLRG DDGELRLGVR RATQLKNEAI 300 FKAFSSESSK MRTLSAVADS LKHGSVFHIS YNPRATASEF VVPYWKFVKS FSHPVCIGMR 360 FKFHFESEDV NERRAGMIAG VSEVDPIRWP GSKWRSLMVQ WEDATDCNSQ NRVSPWEIEI 420 VGGSVSVAHS LSASSSKRTK LCPQGNLDVP ALYGNGRPDS VETEKFPRVL QGQELMGSRT 480 HRVTCSPQSI NITKSKSFDA WRFLTDTRSC MLGSSTSRLP VQYSGYTHQS VSFGESIGFP 540 EVLQGQEISQ TVPPFQGMLP DACSAKSRYE LKNYVCTPAT MNGLSSANEG YYLSLSTVPP 600 SPPSRLMLYQ TGVPQLELTT KNNEKSGNDS HPALPQHKLP GETSWDQFKI GKASTPGNTA 660 NSGNDGREVG RTSCRLFGFS LTEKIIPTDE GGEKEGGYET DCQNPRMLDL FGYNCTTPVI 720 QT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-102 | 79 | 419 | 19 | 353 | Auxin response factor 1 |
4ldy_B | 1e-102 | 79 | 419 | 19 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072330 | 0.0 | AK072330.1 Oryza sativa Japonica Group cDNA clone:J023039P13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634503.1 | 0.0 | auxin response factor 3 isoform X2 | ||||
Swissprot | Q5JMM1 | 0.0 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | A0A0E0JNT6 | 0.0 | A0A0E0JNT6_ORYPU; Auxin response factor | ||||
STRING | OPUNC01G30260.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-148 | ARF family protein |
Publications ? help Back to Top | |||
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