PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G27950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 293aa    MW: 31890.2 Da    PI: 7.352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G27950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-13147193455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  OPUNC01G27950.1 147 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 193
                      799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.047143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-15146197No hitNo description
SuperFamilySSF474591.83E-16146198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSWSETDAAL FAAVLGHDAA HHLATTAPHL DAPEASPSSA ELQARLHDLV ERQGAPLEDF  60
MRIFGKDLSP GRPSQPMGCD APWTPRLAVQ TTPARPAKKE VVKARPADPP KSLDFSKANV  120
QEQAGGEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PKISKMDKAS  180
LLSDAIAYIQ ELEARLRGDA PVPARAEGPA VEVKAMQDEV VLRVTTPLDE HPISRVFHAM  240
RESQLSVVAS DVAVSDDAVT HTLMVRSAGP EQLTAETVLA AMSRGVSVTT PSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28141229283Transcription factor MYC2
5gnj_B2e-28141229283Transcription factor MYC2
5gnj_E2e-28141229283Transcription factor MYC2
5gnj_F2e-28141229283Transcription factor MYC2
5gnj_G2e-28141229283Transcription factor MYC2
5gnj_I2e-28141229283Transcription factor MYC2
5gnj_M2e-28141229283Transcription factor MYC2
5gnj_N2e-28141229283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0030230.0AP003023.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0684B02.
GenBankAP0033810.0AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.11e-152transcription factor bHLH13
SwissprotA0A3Q7ELQ28e-57MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0E0JN040.0A0A0E0JN04_ORYPU; Uncharacterized protein
STRINGOPUNC01G27950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.13e-41ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]