PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G26350.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 383aa    MW: 41666.3 Da    PI: 8.5876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G26350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM385.1e-121393779
              NAM  7 FhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratk 79
                     +hP++ el++ yL+++v+++     +  +++i +vd+y+ +P +L +    ++++ +ek ++fFs++++k+++g+r+ r++ 
  OPUNC01G26350.1 13 WHPSELELITSYLQPRVSSSAnkaaC-HHRFIYNVDVYSDDPARLTTkfrpALSGdREKVLFFFSPARTKTSRGHRRARTVV 93
                     79***************999854322.2356**************8435553333244566*****************9532 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.3397156IPR003441NAC domain
SuperFamilySSF1019416.41E-1711156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVDACPPVLA SSWHPSELEL ITSYLQPRVS SSANKAACHH RFIYNVDVYS DDPARLTTKF  60
RPALSGDREK VLFFFSPART KTSRGHRRAR TVVDTGEGAG APKLASRPFS TPAGNVLDTR  120
SRTGWLMVEL GLDREQQQEN LTDDDSPLVL CKIYFTPRTP AGGRMPLDLA GLKRNAAGEL  180
VGPSTPPAGQ RRPSLSGSTE NDSTQAGSSG SKEASDGSSG PKEASETKSI TERADASTAA  240
STENSIAERS DGTTTISTEL PQQQPIVPVV KACRDRDTMD VDCPTRVEAH HNIVDDDDDH  300
DHARVGHTST PCLKIHNPRP AQPIVLGRTT TQPWPVQAAA HRSTTTTHWV WVTTDQTSSR  360
SRCKRRAFSE ARRRRRATCP GIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359364RSRCKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033351e-58AP003335.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1144G04.
GenBankAP0149571e-58AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JMD60.0A0A0E0JMD6_ORYPU; Uncharacterized protein
STRINGOPUNC01G26350.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-09NAC domain containing protein 63