PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G25690.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 349aa MW: 38787.2 Da PI: 5.3068

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G25690.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.5	1.3e-19	46	179	7	128
NAM 7 FhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 hPt++elv yL+++v + + + ++ +i+evd+y+++P dL + + +++++ wyfFs + +g rk r+++ +g W++ OPUNC01G25690.1 46 VHPTEQELVETYLRPRVVSGDKPSSSpcgfIIHEVDVYSANPADLTRgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWHSEAG 137 59************888774443344447**********8557777544558889*98775..58899997664478899 PP NAM 89 dkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 k+v+++ +g g ++ + f ++ ++ + +++ W+m e +l OPUNC01G25690.1 138 AKPVFAAsSGCRLGHRQNFSFITKdDDGQRVRSGWLMVELSL 179 999867778*******5436667789***99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.743	40	199	IPR003441	NAC domain
Pfam	PF02365	2.0E-13	45	178	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-28	47	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGAASRPRRH CKAPRRLDDD DDTDVFHPSE LLPNRLDDDH EDDMDVHPTE QELVETYLRP 60 RVVSGDKPSS SPCGFIIHEV DVYSANPADL TRGFAPAVAR SSGDEAWYFF SAVRGLKGGR 120 KARTVDDGAG CWHSEAGAKP VFAASSGCRL GHRQNFSFIT KDDDGQRVRS GWLMVELSLD 180 VDGQDDDEEQ LVLSKVYFSP RAPGAKKPTV AAVAMSRHKR KLSTTDIASP PPRQRRHRVS 240 SSSPEEMNAS PSPAVSAPDQ QEGDDDPDRG SISWWLRRVF GLTATFTEDE CIELNPWLKD 300 ILRPFPPPSL PTPSPSCPSP RRKLIDMPEI REFIMRGPYL GDPPSPQYE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGAASRPRRH CKAPRRLDDD DDTDVFHPSE LLPNRLDDDH EDDMDVHPTE QELVETYLRP  60
RVVSGDKPSS SPCGFIIHEV DVYSANPADL TRGFAPAVAR SSGDEAWYFF SAVRGLKGGR  120
KARTVDDGAG CWHSEAGAKP VFAASSGCRL GHRQNFSFIT KDDDGQRVRS GWLMVELSLD  180
VDGQDDDEEQ LVLSKVYFSP RAPGAKKPTV AAVAMSRHKR KLSTTDIASP PPRQRRHRVS  240
SSSPEEMNAS PSPAVSAPDQ QEGDDDPDRG SISWWLRRVF GLTATFTEDE CIELNPWLKD  300
ILRPFPPPSL PTPSPSCPSP RRKLIDMPEI REFIMRGPYL GDPPSPQYE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638896.1	1e-166	uncharacterized protein LOC107276912
TrEMBL	A0A0E0JM56	0.0	A0A0E0JM56_ORYPU; Uncharacterized protein
STRING	OPUNC01G25690.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4011	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	1e-13	NAC domain containing protein 63