PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G25350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 19377.7 Da PI: 7.0733 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.2e-09 | 11 | 34 | 20 | 45 |
TTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwq 45 Gg+ W++Ia+ ++ gRt++++k++w+ OPUNC01G25350.1 11 GGR-WSKIAKQLP-GRTDNEIKNFWR 34 677.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.816 | 1 | 41 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-7 | 10 | 41 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-12 | 11 | 36 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-7 | 11 | 35 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-7 | 12 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEYARAPFIS GGRWSKIAKQ LPGRTDNEIK NFWRSKIQKK RKPQLGEATA AAAAAAAFVT 60 ADGQASANTS QGSSTLLQGG VSSADLSAAA SMFSSGHNQS LAAGGVAMSS LPELVAESSD 120 NFSWAFEDLW PAMAPTQPFN FSLDDRLDIT LRQQLLYALS EVLRLHVQNH FSFHFCEHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0JM11 | 1e-128 | A0A0E0JM11_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G25350.1 | 1e-129 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP55091 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 2e-17 | myb domain protein 24 |