PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G22740.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 855aa MW: 90019.2 Da PI: 3.9029

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G22740.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	765	789	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OPUNC01G22740.3 765 CGSCRILLAYFRGAGYVHCTCCQTM 789 ***********************96 PP
2	zf-LSD1	39.6	8.5e-13	803	827	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+ C +V OPUNC01G22740.3 803 CGHCATLLMYPFGAPAVKCSFCLFV 827 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.9E-11	762	792	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-7	765	788	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.8E-8	801	828	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.9E-10	803	827	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MQEQTAGSML AMLVTYREID TSAVSVSPVL ESGEPDAAQI DVVAGMQEEA SGSMLAMEVT 60 YSETDATAVS VSPVLDSVEP DAAKIDVVAG MQEEAPGSML AMEVMYGETD TAAVSVPPVL 120 ESGEEGSLQE SMQRPSSPAI NTEQESMQRP SSPTIDTETS LRSLEMAPPG FENCKVSWLP 180 LAPPTLLGES IPSLPVAATP KALLVMPEEA VESVPLSEAL DAEKSASIMQ AEPSSPNIPP 240 PGFENFKSSW LPLPTTPPPV ETADVLPDVV ITKAVKAPIE EVSRPLLALE VTNMESDTVL 300 NILPTEGAEG LLQQALLRPP SPVAQSEPCL QNEMAPPGFE NFKSSSEPCS TEEKAPPGSD 360 NFKSSSEPCS PEEMAPPGFE NFKSSFEPCS SEEMAPPGFE NFKSSWPPLP TMPQTAYALP 420 DAAAADALAA TVEEAAGPPP ALELEAMDVD MDAIHPPPLP FDSGVESSQK PLSRAPSPIM 480 QEAPCSPDRA PPGFETYKSS QLLLPSPSLA QTTNVRQDQS VTEPVSVTEE APQPLHSVEV 540 MGAHMDAVPP LLPSSESGAD GLSPQQFPQP PPAEKGTTTC LPDMVHSGCD DLEPSQLLPL 600 PAVISPVQTP DGLADVPAVD RVAVASEESP QRPLVSGEME AGTVPIQSSP LKNASEGSLP 660 QLESESHSPT SQAADSLLDA SGSKSVAVAS EEMSQPPLAL QATTTDLVST TAMQPQSEGI 720 VDESLQHQHP PSSTVHDAPC LQDSVPLVPP PPSPYLNKEV GQMVCGSCRI LLAYFRGAGY 780 VHCTCCQTMN YVLEAHEVGK VHCGHCATLL MYPFGAPAVK CSFCLFVTEI GERNVRRRLS 840 IEQPTRTNSS GLAEA

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MQEQTAGSML AMLVTYREID TSAVSVSPVL ESGEPDAAQI DVVAGMQEEA SGSMLAMEVT  60
YSETDATAVS VSPVLDSVEP DAAKIDVVAG MQEEAPGSML AMEVMYGETD TAAVSVPPVL  120
ESGEEGSLQE SMQRPSSPAI NTEQESMQRP SSPTIDTETS LRSLEMAPPG FENCKVSWLP  180
LAPPTLLGES IPSLPVAATP KALLVMPEEA VESVPLSEAL DAEKSASIMQ AEPSSPNIPP  240
PGFENFKSSW LPLPTTPPPV ETADVLPDVV ITKAVKAPIE EVSRPLLALE VTNMESDTVL  300
NILPTEGAEG LLQQALLRPP SPVAQSEPCL QNEMAPPGFE NFKSSSEPCS TEEKAPPGSD  360
NFKSSSEPCS PEEMAPPGFE NFKSSFEPCS SEEMAPPGFE NFKSSWPPLP TMPQTAYALP  420
DAAAADALAA TVEEAAGPPP ALELEAMDVD MDAIHPPPLP FDSGVESSQK PLSRAPSPIM  480
QEAPCSPDRA PPGFETYKSS QLLLPSPSLA QTTNVRQDQS VTEPVSVTEE APQPLHSVEV  540
MGAHMDAVPP LLPSSESGAD GLSPQQFPQP PPAEKGTTTC LPDMVHSGCD DLEPSQLLPL  600
PAVISPVQTP DGLADVPAVD RVAVASEESP QRPLVSGEME AGTVPIQSSP LKNASEGSLP  660
QLESESHSPT SQAADSLLDA SGSKSVAVAS EEMSQPPLAL QATTTDLVST TAMQPQSEGI  720
VDESLQHQHP PSSTVHDAPC LQDSVPLVPP PPSPYLNKEV GQMVCGSCRI LLAYFRGAGY  780
VHCTCCQTMN YVLEAHEVGK VHCGHCATLL MYPFGAPAVK CSFCLFVTEI GERNVRRRLS  840
IEQPTRTNSS GLAEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065375	0.0	AK065375.1 Oryza sativa Japonica Group cDNA clone:J013008L21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621461.1	0.0	protein LOL5
TrEMBL	A0A0E0JL42	0.0	A0A0E0JL42_ORYPU; Uncharacterized protein
STRING	OPUNC01G22740.4	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-29	lsd one like 2