PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G20500.4

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 699aa MW: 74550.5 Da PI: 5.9455

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G20500.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	462	484	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ar G C Gd C++ H OPUNC01G20500.4 462 KSKPCTHYAR-GSCLKGDDCPYDH 484 6789****.*********** PP
2	zf-CCCH	31.1	4e-10	490	511	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ OPUNC01G20500.4 490 PCHNFMENGMCIRGDKCKFSHV 511 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.042	431	458	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	432	456	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.026	432	457	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-4	459	485	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.187	460	487	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-5	460	486	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	462	485	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	488	512	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	489	512	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.277	490	513	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-7	490	511	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	490	510	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MEEPSPVPPA AAPASLAAAP ATDALSRRRA HLDSSSYRAL SRLFSHCLHL HPPRHAARPD 60 AEVEPAAATA AAATPPGGFG GLPHGVSPPP ADAGCDRGKN LEVEVALGKP TPHETSSTSA 120 SPDAAVNPTT DPATVPQGTA DGTVAGIERV EEVVFAGSTS EKADADGKEL GAGAGLMGDD 180 EALRSMQACL DGEDNELVNE MVDNDDEKLQ LDAMMSNLSG LLDDASAGIM SAQSCGLSGD 240 KLQSDDRVVG EVKELGAGIG NDKSVGNLDH GSIDHGGFEE GEIEGDTQNL DADDSVNSEL 300 EDDVDGVELV EDFDSRRIGE NGSCGHDVKS HNLHLIPQKG NGDPARNNQC NSKDNSQLHV 360 AREQAVSYDE VVDWNETPLP DDKAVKQGNT RKRTLTEERK AKKTKNKRIK RALQREAEGV 420 KRLKLQPAIK PKVVQDCRFY LHGKCQQGNL CKFSHDTTPL TKSKPCTHYA RGSCLKGDDC 480 PYDHELSKYP CHNFMENGMC IRGDKCKFSH VIPTAEGPST PDAKKSNASL LPEKANCQEQ 540 TSRQKTSTVY SGEPVTSAPI KHHSILKNLA GISGNAQKAP VRIPKGIQFL PFNKARSDSS 600 ILHQDVVSTE KHKNPTGGPH QNFGGPQPAE GEKNGKHNGH RSAPLLDEKN SSKQANLHPC 660 SEPQKNSLPT TAAVPSSVTQ HEFSEASRIL QEFLFGSGN

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MEEPSPVPPA AAPASLAAAP ATDALSRRRA HLDSSSYRAL SRLFSHCLHL HPPRHAARPD  60
AEVEPAAATA AAATPPGGFG GLPHGVSPPP ADAGCDRGKN LEVEVALGKP TPHETSSTSA  120
SPDAAVNPTT DPATVPQGTA DGTVAGIERV EEVVFAGSTS EKADADGKEL GAGAGLMGDD  180
EALRSMQACL DGEDNELVNE MVDNDDEKLQ LDAMMSNLSG LLDDASAGIM SAQSCGLSGD  240
KLQSDDRVVG EVKELGAGIG NDKSVGNLDH GSIDHGGFEE GEIEGDTQNL DADDSVNSEL  300
EDDVDGVELV EDFDSRRIGE NGSCGHDVKS HNLHLIPQKG NGDPARNNQC NSKDNSQLHV  360
AREQAVSYDE VVDWNETPLP DDKAVKQGNT RKRTLTEERK AKKTKNKRIK RALQREAEGV  420
KRLKLQPAIK PKVVQDCRFY LHGKCQQGNL CKFSHDTTPL TKSKPCTHYA RGSCLKGDDC  480
PYDHELSKYP CHNFMENGMC IRGDKCKFSH VIPTAEGPST PDAKKSNASL LPEKANCQEQ  540
TSRQKTSTVY SGEPVTSAPI KHHSILKNLA GISGNAQKAP VRIPKGIQFL PFNKARSDSS  600
ILHQDVVSTE KHKNPTGGPH QNFGGPQPAE GEKNGKHNGH RSAPLLDEKN SSKQANLHPC  660
SEPQKNSLPT TAAVPSSVTQ HEFSEASRIL QEFLFGSGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622402.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_015622403.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A0E0JKB2	0.0	A0A0E0JKB2_ORYPU; Uncharacterized protein
STRING	OPUNC01G20500.2	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-07	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]