PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G13870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 380aa    MW: 39870.4 Da    PI: 4.8719
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G13870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.53.9e-141149341
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     i    +r  tf+kR++ + KKAeELS+LC+++va++ ++
  OPUNC01G13870.1 11 IAHRQKRAATFAKRKESLKKKAEELSTLCGVRVALVCAG 49
                     5567899*****************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.526146IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-10165IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-17180IPR002100Transcription factor, MADS-box
CDDcd002662.48E-22284No hitNo description
PRINTSPR004048.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-141149IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MARRKIPISL IAHRQKRAAT FAKRKESLKK KAEELSTLCG VRVALVCAGT GVPGGGAVSK  60
EVWESEEGVL TEYRALPPEV RAQHTHRIYL EEELGKERAK LARVRQDGAF TSWDAALDGI  120
TVDEARALLE SIDAARAAAS ARREALGLLD DGNGVDDDGG FALQLQQQHI PPGASHAVVV  180
PVGHGVQYIG SSGGSNQMQA TPAADGINCA DPYDAVPWDN TFQPHLMRTG DHCVPMYSYL  240
WQAPDGNGWP DLATGCTDES CSCNAAAAAA AAVPAMYAPS LDTVHGSFLS GPAQPVAFST  300
GADFINAPND FLTMGLGGGF TNVGDYSAQS SADGFQLGDM FGAEPGDTQS QNWPIGGASS  360
TSSATIRRNE TAAPSSILIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JI160.0A0A0E0JI16_ORYPU; Uncharacterized protein
STRINGOPUNC01G13870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.16e-08AGAMOUS-like 86