PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G13860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 398aa    MW: 41993 Da    PI: 4.2495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G13860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.3e-114271639
                     HHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF 16 RrngilKKAeELSvLCdaevavii 39
                     R+++++KKA+ELSvLCd+ va++ 
  OPUNC01G13860.1  4 RKETVIKKAKELSVLCDIPVALVC 27
                     9********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.007126IPR002100Transcription factor, MADS-box
PfamPF003191.6E-6427IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-9466IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAGRKETVIK KAKELSVLCD IPVALVCAVG GAVEVWESKE GVLDMYRALP PEVRTTHAHT  60
HRGYLERELR TERAKLAKVR QEGVFNSWDD ALNGITAEEA WALLESIDAA IAAAIARQEA  120
LGLLDGADGV NGDGGLHLQH VPPGASDAVA PVVGHGVQYI GSSSGGGSQQ EMTPAADGDR  180
VHNADQYDIL PCDDNTFQAH SADVMLPACG FKCTGGDHCV DMDGYMWEAP GDANIHHGWP  240
DQTMWCTDES CSYNAAAATN TGHGTFLAAP AQPLAFSTDA DFINAPNDFL TMGTGGSFIN  300
VGDYSAQSSA DEFHLSDTNQ LDQTHYPFGG TGGGAEPGYT QSQSWGRFTN VSDYLAQSSA  360
DECQLVSVGG AIHIDQMHYL SGAGGAEPSD TQSQNWGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033311e-125AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149571e-125AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-125CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JI150.0A0A0E0JI15_ORYPU; Uncharacterized protein
STRINGOPUNC01G13860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-06AGAMOUS-like 103