PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G11730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 298aa    MW: 32520.3 Da    PI: 6.421
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G11730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+  r  tf kRr g+ KKA+EL +LCd++++++++++
  OPUNC01G11730.1 10 RIANDATRRATFKKRRRGLVKKASELATLCDVDACLVVYGE 50
                     899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.867150IPR002100Transcription factor, MADS-box
CDDcd002661.37E-33285No hitNo description
SuperFamilySSF554553.14E-24394IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-11323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-181050IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MARKKIVLDR IANDATRRAT FKKRRRGLVK KASELATLCD VDACLVVYGE GDAEPEVWPS  60
MEVAMSVLRQ FRALPEMEQC KKMMNQEDFL RQRIGKLKDQ VSKMDRENHE RETVMLLHDA  120
LQGRLGTYET LSVEQLTSLD CLASARLKAV ADRLVEIRDH SQVIVPPPPL PPAPLPAPPA  180
MLPPPPSPHV TPAMPLSSMP PAMGPPPGFE GMNHHHHLNQ NHFINNDQNA WLMNVARNGG  240
DLGALVYSAF AGSSNTGGAG TSGAAPAGPD MMDLANPDMP GFGWPWDDDS AGPSFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIVLDRIANDATRRATFKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878343.11e-149agamous-like MADS-box protein AGL80
TrEMBLA0A0E0JHA80.0A0A0E0JHA8_ORYPU; Uncharacterized protein
STRINGOPUNC01G11730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-25AGAMOUS-like 80