PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G11720.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 236aa    MW: 26000.8 Da    PI: 10.6102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G11720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.2e-151050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     r+  +s r  tf kRr g++KKA EL  LC++ v+v+++++
  OPUNC01G11720.1 10 RVAKDSTRRLTFKKRRRGLIKKAGELASLCGIGVCVVVYGE 50
                     677889999******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.633150IPR002100Transcription factor, MADS-box
CDDcd002667.85E-27285No hitNo description
SuperFamilySSF554557.06E-21395IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MARNRIILKR VAKDSTRRLT FKKRRRGLIK KAGELASLCG IGVCVVVYGE GEVNPEVWPS  60
APEARAILSR FNSAPDIDRF KRVTNQEEYL RKRIAKARER ASKADGGNRE RDATVMLYEA  120
ATGRRPVADL NVQELTNLGL VIDERIKHLK ERIERIGGAT LMTPPTSTIP VEASSSSLPP  180
LVPYANGASM EGINKRMKVS THEKGWFINM STMTARSDVG TSVDAEGNTG ASTSYI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020700.0AP002070.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0511C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878329.11e-144agamous-like MADS-box protein AGL80
TrEMBLA0A0E0JHA71e-172A0A0E0JHA7_ORYPU; Uncharacterized protein
STRINGOPUNC01G11720.11e-172(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-26AGAMOUS-like 80