PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G10020.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 621aa MW: 68812.2 Da PI: 6.5154

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G10020.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.2	3.5e-49	123	248	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 Gf FhP+d el+ +yLkkk++g+k+e e+i+evdiyk+ePwdLp+ v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd++++ OPUNC01G10020.3 123 GGFGFHPKDTELIFHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKM 215 69************************.99***********5356667999*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLvf++gr p+g++t+W+mhey + OPUNC01G10020.3 216 -DKRTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 248 .999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-56	116	271	IPR003441	NAC domain
PROSITE profile	PS51005	52.995	121	271	IPR003441	NAC domain
Pfam	PF02365	1.1E-22	124	247	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MGPTHQAPTQ WAPRVSRTRS AARPPPSVAS SLLRLPRHPS SSSPFFFSLH LLRLRLGLAA 60 AAFLFARSLP LSRLAIHGEP AVVVHPDAPR LARAKLRLFL PDARAGGTGE SSRRAAALIL 120 LLGGFGFHPK DTELIFHYLK KKIHGQKIEY EIIPEVDIYK HEPWDLPAKC DVPTQDNKWH 180 FFAARDRKYP NGSRSNRATV AGYWKSTGKD RAIKMDKRTI GTKKTLVFHE GRPPTGRRTE 240 WIMHEYYIDE RECQACPDMK DAFVLCRVTK RNDWISGNGN ELDNSDPHPE PIDAAPSVVA 300 PIVGAEQLNG EATPVIVAEP PDGVTTSTIT ADIPSPSDGI NLDEWLNELF DPFFDPEQSL 360 ASADLSPDEQ NVESSNAGAL APKVEQDYSP KVEQDYSSPN ENIEDDTEYL LTEDVYNILH 420 PGTDDFNMLQ NPMDQEALAF PYQYLTGGMD PFDLANNFGS GIHQEELWSP QANTEPSQAN 480 EAADNGITRR YRHVKTPETS ALQYKGKTLA KMQVGINKMA TSSSESINQT IKFENNSGRL 540 VEHQKNQTHD VASTKRSDAG KPSTELSSNR GFLRGIRNAF AGCSDARWNI ILVAVFAIGV 600 AMVALHVGQR LGLSQRDQQH A

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MGPTHQAPTQ WAPRVSRTRS AARPPPSVAS SLLRLPRHPS SSSPFFFSLH LLRLRLGLAA  60
AAFLFARSLP LSRLAIHGEP AVVVHPDAPR LARAKLRLFL PDARAGGTGE SSRRAAALIL  120
LLGGFGFHPK DTELIFHYLK KKIHGQKIEY EIIPEVDIYK HEPWDLPAKC DVPTQDNKWH  180
FFAARDRKYP NGSRSNRATV AGYWKSTGKD RAIKMDKRTI GTKKTLVFHE GRPPTGRRTE  240
WIMHEYYIDE RECQACPDMK DAFVLCRVTK RNDWISGNGN ELDNSDPHPE PIDAAPSVVA  300
PIVGAEQLNG EATPVIVAEP PDGVTTSTIT ADIPSPSDGI NLDEWLNELF DPFFDPEQSL  360
ASADLSPDEQ NVESSNAGAL APKVEQDYSP KVEQDYSSPN ENIEDDTEYL LTEDVYNILH  420
PGTDDFNMLQ NPMDQEALAF PYQYLTGGMD PFDLANNFGS GIHQEELWSP QANTEPSQAN  480
EAADNGITRR YRHVKTPETS ALQYKGKTLA KMQVGINKMA TSSSESINQT IKFENNSGRL  540
VEHQKNQTHD VASTKRSDAG KPSTELSSNR GFLRGIRNAF AGCSDARWNI ILVAVFAIGV  600
AMVALHVGQR LGLSQRDQQH A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-41	112	274	6	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT830886	0.0	CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649784.1	0.0	NAC domain-containing protein 74
Swissprot	Q7GCL7	0.0	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A0E0JGN5	0.0	A0A0E0JGN5_ORYPU; Uncharacterized protein
STRING	OPUNC01G10020.3	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	7e-60	NAC domain containing protein 86

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]