PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G10020.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 597aa    MW: 66280.6 Da    PI: 7.0217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G10020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.5e-501472741128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGf FhP+d el+ +yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd+++
  OPUNC01G10020.1 147 LPPGFGFHPKDTELIFHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAI 239
                      79****************************.99***************5356667999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++++g+kktLvf++gr p+g++t+W+mhey +
  OPUNC01G10020.1 240 KM-DKRTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 274
                      *9.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-58138297IPR003441NAC domain
PROSITE profilePS5100554.903147297IPR003441NAC domain
PfamPF023658.2E-24148273IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MGPTHQAPTQ WAPRVSRTRS AARPPPSVAS SLLRLPRHPS SSSPFFFSLH LLRLRLGLAA  60
AAFLFARSLP LSRLAIHGEP AVVVHPDAPR LARAKLRLFL PDARAGGTGE SSRRAAALIL  120
LLGASYITPL FRWFNICTMD SLRDMVLPPG FGFHPKDTEL IFHYLKKKIH GQKIEYEIIP  180
EVDIYKHEPW DLPAKCDVPT QDNKWHFFAA RDRKYPNGSR SNRATVAGYW KSTGKDRAIK  240
MDKRTIGTKK TLVFHEGRPP TGRRTEWIMH EYYIDERECQ ACPDMKDAFV LCRVTKRNDW  300
ISGNGNELDN SDPHPEPIDA APSVVAPIVG AEQLNGEATP VIVAEPPDGV TTSTITADIP  360
SPSDGINLDE WLNELFDPFF DPEQSLASAD LSPDEQNVES SNAGALAPKV EQDYSPKVEQ  420
DYSSPNENIE DDTEYLLTED EELWSPQANT EPSQANEAAD NGITRRYRHV KTPETSALQY  480
KGKTLAKMQV GINKMATSSS ESINQTIKFE NNSGRLVEHQ KNQTHDVAST KRSDAGKPST  540
ELSSNRGFLR GIRNAFAGCS DARWNIILVA VFAIGVAMVA LHVGQRLGLS QRDQQHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-441403008172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281870.0AB028187.1 Oryza sativa mRNA for OsNAC8 protein, complete cds.
GenBankAK1028080.0AK102808.1 Oryza sativa Japonica Group cDNA clone:J033108J08, full insert sequence.
GenBankCT8308860.0CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.
GenBankGU1203470.0GU120347.1 Oryza sativa Japonica Group clone KCS602B05 NAC8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0E0JGN30.0A0A0E0JGN3_ORYPU; Uncharacterized protein
STRINGOPUNC01G10020.30.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.16e-65NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]