PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G09140.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 414aa    MW: 44173 Da    PI: 5.4533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G09140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.18.9e-16139354127
              NAM  54 eekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfyk...grapkgektdWvmheyr 127
                      e+  +yfFskr+ +++  + +r++r+++sg+Wka+g +k+v sk  +g +vg k ++vfyk   + +++++kt W mhe++
  OPUNC01G09140.1  13 EDGYIYFFSKRQFATKagNRRRPTRVADSGTWKASGGSKTVRSKkvGGINVGQKLSMVFYKrkfEGDRNPVKTYWGMHEFT 93 
                      33366*****9977662256688999****************99888899**********52223456778********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.0831121IPR003441NAC domain
SuperFamilySSF1019415.23E-1812100IPR003441NAC domain
PfamPF023654.9E-81793IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MACTAETYIG NKEDGYIYFF SKRQFATKAG NRRRPTRVAD SGTWKASGGS KTVRSKKVGG  60
INVGQKLSMV FYKRKFEGDR NPVKTYWGMH EFTKIIPVCK NQDQKGGGRR TGERCCRSVE  120
HVRALHVDDT ATATITVTAT ATAIAGHARI VIVNATTATA IAGPGRIVVG DVAATAAARH  180
GRVIVDDAAA TIAASLVGGM MSMSDQANMA STSQASTPSS ELLQDWYEYE LVHARRLPRD  240
NGSNVVYVGT PVAHCGDPAG ADGAADELAG GTTSRRPPPA LASTGRRRQL QPPGARRHGG  300
GVQGQHEQQQ QQQQQHPQEP QALVVVDCED GYGAMADGDD AQLGAAEFDP ERIAEMVSQI  360
MDGEFAFKFE DDTIVRFNQV FPGDDEVVAA PMLIDGGEDG DGADGDDGDD PFEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923889e-75AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221449e-75AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149669e-75AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.11e-110NAC transcription factor NAM-B2
TrEMBLA0A0E0JGB90.0A0A0E0JGB9_ORYPU; Uncharacterized protein
STRINGOPUNC01G09140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-09NAC-like, activated by AP3/PI