PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G09100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 302aa MW: 32227.2 Da PI: 8.1946 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 72.3 | 6.4e-23 | 36 | 82 | 4 | 50 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ OPUNC01G09100.1 36 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 82 6899*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.95 | 20 | 104 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.9E-21 | 37 | 82 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MASSAQPQQQ QQEQPAAVPT PAPASEAQPQ KPTRVSLSYE EISKLFSLPI AEAASILGVC 60 TSVLKRICRS HGIVRWPYRK LVSGKSGDDT KNAEREKAKE LLEISKIAKQ KALSASGLST 120 VSPGAFQGVA KSQQGSSKTG QISPPGKQNV LGGSAILAHG TQTKGIPTYM DDFKYGFPSS 180 GLSLQTMKWW GTDSHTETTP AKDDNYEAPE SANEASKGMT DDELDWGADE GEAEADADSA 240 ITIEPSAQLC SLRRKAVDDG RKLLTGKSCG GLELCRLNKR QKMALAQVFG ASLPEQFRSK 300 LG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058984 | 0.0 | AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625714.1 | 0.0 | uncharacterized protein LOC4326758 | ||||
TrEMBL | A0A0E0JGB6 | 0.0 | A0A0E0JGB6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G09100.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6705 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 2e-10 | RWP-RK domain-containing protein |