PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC01G06730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21966.7 Da PI: 9.6705 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.2e-15 | 33 | 80 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +WT+eEd l ++ ++ G ++W+++a +m+ +R++kqc++rw+++l OPUNC01G06730.1 33 AWTPEEDASLERLARENGFRHWRRVAMEMQprGRRSPKQCRDRWRDHL 80 7********************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.141 | 26 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-12 | 30 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.62E-16 | 33 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-12 | 33 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-16 | 33 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-14 | 33 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.586 | 81 | 132 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2 | 85 | 134 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.09E-6 | 87 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00196 | 88 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-5 | 89 | 133 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
METNSSAFSS TTEVESTPSS GGRIVLRIRL PPAWTPEEDA SLERLARENG FRHWRRVAME 60 MQPRGRRSPK QCRDRWRDHL ARDVYHRPFT VDDDAELAHL RLRDGGDRWK DISRAVRCRS 120 SSAMRRRWRE LRKSNAFLRA LYWHPDQPVQ PLLEDALSYS DVVDSSVASY RGGCDAMAGG 180 GTIVAPGLAC LAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP002092 | 0.0 | AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09. | |||
GenBank | AP002093 | 0.0 | AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636830.1 | 2e-83 | transcription factor MYB3R-5 | ||||
TrEMBL | A0A0E0JFF9 | 1e-138 | A0A0E0JFF9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G06730.1 | 1e-138 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-15 | myb domain protein 73 |