PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G05570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 369aa MW: 39272.2 Da PI: 9.5228 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.3e-13 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky OPUNC01G05570.1 112 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 156 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 5.8E-4 | 2 | 23 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.565 | 3 | 19 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.334 | 105 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-17 | 106 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-19 | 108 | 160 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.6E-11 | 109 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-12 | 109 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.92E-9 | 112 | 157 | No hit | No description |
Pfam | PF00249 | 1.2E-10 | 112 | 156 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MTRRCSHCSN NGHNARTCPA RGGGGGGGGV RLFGVRLTSP PEVAMKKSAS MSCIASSLGG 60 GGGGGSGGSS PAAGGGVGGG GRGEGAAGYV SDDPTHASCS TNGRTERKKG TPWTEEEHRM 120 FLMGLQKLGK GDWRGISRNF VVSRTPTQVA SHAQKYFIRQ TNSSRRKRRS SLFDMVPEMP 180 MDESPVVVEQ LMLHSTQDEA TSSNQLPISH LVKQKEHEFA RHLSDLQLRK HEESEFTEPS 240 LAALDLEMNH AAPFKTKSVL TMPAFYPALI HVPLTLWPPN VANVGESGTN HEILKPTPVN 300 GKEVINKADE VVGMSKLTIG EGSSNSIEPS ALSLQLTGPT NTRQSAFHVN PPMAGPDLNK 360 RNNSPIHAV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071611 | 0.0 | AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621787.1 | 0.0 | transcription factor MYBS3-like | ||||
TrEMBL | A0A0E0JF22 | 0.0 | A0A0E0JF22_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G05570.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-74 | MYB_related family protein |