PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G01580.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 293aa    MW: 32031 Da    PI: 4.9472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G01580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  OPUNC01G01580.1 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3062581IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-212680IPR009057Homeodomain-like
SMARTSM007171.2E-132979IPR001005SANT/Myb domain
PfamPF002494.6E-153077IPR001005SANT/Myb domain
SuperFamilySSF466892.29E-2231104IPR009057Homeodomain-like
CDDcd001671.36E-113277No hitNo description
Gene3DG3DSA:1.10.10.608.8E-781103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSQRRVAGPM GVMSKQQQEA MAEEMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS  60
GLKRTGKSCR LRWLNYLKPD IKRGNLTPEE QLLILELHSK WGNSAASAGE DGQRDQELLE  120
DEGAEAGQAA QGRRQQHRLP RRRPLLLDAS PPREDGHAAA AAATATPPPR CHGRLLLILP  180
PVPCFSELRW DQQIQSSGEL DDGAAGVFVD SALGSLSLDG LDLGPAEYYS DSTLLDYLNS  240
SCTGSAMMTM MTTSGYNGNY NYCGGGAMDG DTWRSDEVCQ AAARKLGEWG GGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-132711024106MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074240.0AK107424.1 Oryza sativa Japonica Group cDNA clone:002-127-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633684.11e-138transcription factor MYB62 isoform X1
TrEMBLA0A0E0JDL30.0A0A0E0JDL3_ORYPU; Uncharacterized protein
STRINGOPUNC01G01580.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.17e-42myb domain protein 62