PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G01540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 21809.3 Da PI: 7.2528 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 44 | 87 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++ OPUNC01G01540.1 44 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 87 6789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.58E-15 | 38 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.946 | 39 | 93 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-16 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 44 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 46 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-6 | 64 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080110 | Biological Process | sporopollenin biosynthetic process | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0050662 | Molecular Function | coenzyme binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MCNEVSTRAQ LCRAADVSSQ PPPRLTSEHL PAGDPPPLSR SRKRRSFSEE EDELLLKLHA 60 LLGNRWSLIA GRLPGRTDKE VMNHWNSKLI KRMDSTTDHP PSLHDDEHRR RRRRLRSEAH 120 DERDVARHPG HNSSSSSKDV NGGECTVADD ASSCNQDDNR AVAELNLELT LSTPCIYLLL 180 GEKCKDGSMS SQGLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-13 | 43 | 95 | 58 | 110 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 45 | SRKRRS |
2 | 108 | 115 | RRRRRRLR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002860 | 1e-135 | AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08. | |||
GenBank | AP014957 | 1e-135 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-135 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0JDK7 | 1e-139 | A0A0E0JDK7_ORYPU; Uncharacterized protein | ||||
STRING | OS01T0127450-00 | 3e-78 | (Oryza sativa) | ||||
STRING | ONIVA01G01950.1 | 8e-76 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-12 | MYB family protein |