PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G00300.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 298aa MW: 33111.1 Da PI: 6.6773

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G00300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.1	1e-50	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrFhPtdeel+ +yL+k++++ ++++ vi+evdiyk++Pw+Lp + + +++ ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ OPUNC01G00300.1 17 LPAGFRFHPTDEELLLHYLRKRAAAAPCPA-PVIAEVDIYKFNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKPI 109 799************************9.89***********5334455666********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++l g+kk Lvfy+gr p+g+kt+W+mheyrl OPUNC01G00300.1 110 SD-GQTLLGVKKALVFYRGRPPRGTKTSWIMHEYRL 144 9.999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-62	9	174	IPR003441	NAC domain
PROSITE profile	PS51005	59.567	17	174	IPR003441	NAC domain
Pfam	PF02365	2.5E-26	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MSIDLQLPAA CTHMTGLPAG FRFHPTDEEL LLHYLRKRAA AAPCPAPVIA EVDIYKFNPW 60 ELPAMAVFGE SDGEWYFFSP RDRKYPNGVR PNRAAASGYW KATGTDKPIS DGQTLLGVKK 120 ALVFYRGRPP RGTKTSWIMH EYRLADAISI NSKQASSSGS MRLDEWVLCR IYEKKQANQQ 180 LQHYMMDDDD DDDHRMPLPS PPSISDYLVD YSSASDLLFV HNLPASSTDQ TPALQLGRLT 240 AVADHGNEAG RSSNSKRHKT MDDYSISSAQ MSTMLHASST SNNKTQINFS ASGDDTSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-68	17	180	15	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002818	1e-150	AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04.
GenBank	AP014957	1e-150	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-150	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645427.1	1e-121	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BWV2	7e-82	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A0E0JD39	0.0	A0A0E0JD39_ORYPU; Uncharacterized protein
STRING	OPUNC01G00300.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	5e-78	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]