PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G18630.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 373aa MW: 41230.9 Da PI: 7.8632

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G18630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.4	1.8e-46	37	189	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekew.yfFskrdkkyatgkrknr 76 pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+++ r+nr ONIVA12G18630.1 37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgsssssslsTAAAAEKECgYFFCLRGRKYRNSIRPNR 129 69*************************.99***********77899999999888764445677888*************** PP NAM 77 atksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +t sg+Wkatg dk+++s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl ONIVA12G18630.1 130 VTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 189 **************8777666655555*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	48.242	36	214	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-48	36	214	IPR003441	NAC domain
Pfam	PF02365	6.1E-23	38	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK 60 KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSL STAAAAEKEC GYFFCLRGRK 120 YRNSIRPNRV TGSGFWKATG IDKPIYSSSL AAAAAGAGDC IGLKKSLVYY RGSAGKGTKT 180 DWMMHEFRLP SSISDSDHLQ DASETWTICR IFKRSMTYTK GRAAAAASMN KRISHQLQHI 240 HHHQQQFYYH EVVHDHGHHH RRHLQHYAGS ASMAAAAANI VDVIDHSSDA ETTTRSHSHS 300 QSHLVADIRH RQSPFMLDFH AGTAVSSSST AAAVWSEVMS FSRDGGSSSG SSWDELGRIM 360 DISTNSANNN YYL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK  60
KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSL STAAAAEKEC GYFFCLRGRK  120
YRNSIRPNRV TGSGFWKATG IDKPIYSSSL AAAAAGAGDC IGLKKSLVYY RGSAGKGTKT  180
DWMMHEFRLP SSISDSDHLQ DASETWTICR IFKRSMTYTK GRAAAAASMN KRISHQLQHI  240
HHHQQQFYYH EVVHDHGHHH RRHLQHYAGS ASMAAAAANI VDVIDHSSDA ETTTRSHSHS  300
QSHLVADIRH RQSPFMLDFH AGTAVSSSST AAAVWSEVMS FSRDGGSSSG SSWDELGRIM  360
DISTNSANNN YYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	38	214	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	38	214	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	38	214	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	38	214	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	38	214	22	168	NAC domain-containing protein 19
3swm_B	1e-43	38	214	22	168	NAC domain-containing protein 19
3swm_C	1e-43	38	214	22	168	NAC domain-containing protein 19
3swm_D	1e-43	38	214	22	168	NAC domain-containing protein 19
3swp_A	1e-43	38	214	22	168	NAC domain-containing protein 19
3swp_B	1e-43	38	214	22	168	NAC domain-containing protein 19
3swp_C	1e-43	38	214	22	168	NAC domain-containing protein 19
3swp_D	1e-43	38	214	22	168	NAC domain-containing protein 19
4dul_A	1e-43	38	214	19	165	NAC domain-containing protein 19
4dul_B	1e-43	38	214	19	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619497.1	0.0	NAC domain-containing protein 41 isoform X2
TrEMBL	A0A0E0JCS3	0.0	A0A0E0JCS3_ORYNI; Uncharacterized protein
STRING	ONIVA12G18630.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-74	NAC domain containing protein 42