PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16890.1
Common Name1, Snorkel
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 256aa    MW: 27735 Da    PI: 6.6686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.1e-1477128256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++G++ ++  grW AeIrd s +g   r+++g++ tae Aa+a++a +++++g+
  ONIVA12G16890.1  77 RFHGIHMRS-YGRWSAEIRDSSYRG--HRVWIGTYATAEAAARAYDAEARRIHGA 128
                      589999998.8*********65555..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.6E-2577141IPR001471AP2/ERF domain
PROSITE profilePS5103219.32277135IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1878135IPR016177DNA-binding domain
PfamPF008474.2E-778127IPR001471AP2/ERF domain
PRINTSPR003678.5E-67889IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2478135IPR001471AP2/ERF domain
PRINTSPR003678.5E-6101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MCGGCLIPDE LVGKPARRTR AAAAGGDSGD GWKHGRRLCP AAAPCNCKPR RRAGAADDDD  60
VGRRRRTTRT RAASEVRFHG IHMRSYGRWS AEIRDSSYRG HRVWIGTYAT AEAAARAYDA  120
EARRIHGAKA NTNFPPPPND VDSGAPPPPP WDLEAHMRFL GEVELDDGGA EPPPPPSHGI  180
PELLHMEPEL ASATQSVHGD DEPWGLDKYM RFLSEVELDD GGAPLPPPPS QHGGVAAAGS  240
PQYGCRYDYL LLMMCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-12771391476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14965RRRAGAADDDDVGRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5104840.0AB510484.1 Oryza nivara Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0106.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC6L7Y00.0C6L7Y0_ORYNI; Ethylene response factor
STRINGONIVA12G16890.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3124944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-09ERF family protein
Publications ? help Back to Top
  1. Hattori Y, et al.
    The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.
    Nature, 2009. 460(7258): p. 1026-30
    [PMID:19693083]