PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G16880.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 268aa    MW: 29303.5 Da    PI: 8.7155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G16880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.3e-1590140255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G++++k +grW AeIrd    +  k  r ++g+f+taeeAa a++a +++l+g
  ONIVA12G16880.1  90 RFHGIHRRK-SGRWSAEIRD----NmiKGSRSWVGTFDTAEEAAWAYDAVARRLYG 140
                      689***999.7*********....77455************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-2490154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2490149IPR001471AP2/ERF domain
PROSITE profilePS5103218.51890148IPR001471AP2/ERF domain
CDDcd000182.89E-1990147No hitNo description
PfamPF008472.8E-990140IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1990149IPR016177DNA-binding domain
PRINTSPR003672.1E-591102IPR001471AP2/ERF domain
PRINTSPR003672.1E-5114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MCGENDDNGG AAGSSRRLPA VGAMRGPCGC EEKLKTTVVV VLSDDDDYEE EFRRTLVLAR  60
SAVYLLLRAL IHIYTRKRRP AASKKQHRHR FHGIHRRKSG RWSAEIRDNM IKGSRSWVGT  120
FDTAEEAAWA YDAVARRLYG AKARTNFHHL PPPRPVVPLP APAVAKRKMN SKRKKPAEVA  180
VAAEMVAPAG GEPAAGEMAP VLLGNALEAT NGWEFEPYSC MGLVVGGAVQ LLHNYAADEP  240
EPADELQLLH LHGGAMVDFA ADGCLWSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5104860.0AB510486.1 Oryza glumipatula Snorkel 2 gene for Ethylene response factor, complete cds, cultivar: IRGC105668.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JC390.0A0A0E0JC39_ORYNI; Uncharacterized protein
STRINGONIVA12G16880.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-12ERF family protein