PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G12410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 389aa    MW: 41562.5 Da    PI: 8.8781
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G12410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.31.3e-2386130145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  ONIVA12G12410.1  86 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 130
                      689***************************************986 PP
2QLQ58.81.7e-203773137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++
  ONIVA12G12410.1 37 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 73
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-113773IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8363873IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.0E-153872IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.52786130IPR014977WRC domain
PfamPF088798.2E-2088129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN  60
APVPAGLLLP IRRSLHPPLG YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG  120
RHRSRKHVEG QSSHAAKATV PAIAQPPIGA SNGKLSGSHG VSNELTKTLA TNRMMLDKAN  180
LIERSQDYTN QQHNILQNNT KGDNWSEEMS SQADYAVIPA GSLMNTPQSA NLNPIPQQQR  240
CKQSLFGKGI QHDDIQLSIS IPVDNSDLPT NCNKAQMDHV VGGSSNGGNN TRASWIPGSW  300
EASIGGPLGE FFTNTSSASD DKGKSRHPPS LNLLADGHTT SPQLQSPTGV LQMTSFSSVP  360
SSTVSSPAGS LCNGLLTSGL VNAQTVQTL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415570.0AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618985.10.0growth-regulating factor 7 isoform X2
SwissprotQ6AWY20.0GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLA0A0E0JAE00.0A0A0E0JAE0_ORYNI; Uncharacterized protein
STRINGONIVA12G12410.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-46growth-regulating factor 2