PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G11920.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 260aa MW: 28012.5 Da PI: 9.9389

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G11920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.6	5.4e-45	9	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptdeelvv+yL++++ g++l+ + i++v+++ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v ONIVA12G11920.1 9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 100 79***********************998556**********43..3447899******************************** PP NAM 94 sk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg+k++Lvfy+g+ p+g+ktdWvmheyrl ONIVA12G11920.1 101 VSvaaaprsqaAAVVVGMKRSLVFYRGKPPTGKKTDWVMHEYRL 144 987777765444445*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-49	5	176	IPR003441	NAC domain
PROSITE profile	PS51005	48.908	9	176	IPR003441	NAC domain
Pfam	PF02365	7.9E-27	10	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGW 60 SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VSVAAAPRSQ AAAVVVGMKR 120 SLVFYRGKPP TGKKTDWVMH EYRLAGAGLA PCRRAATADH PARPAEGWVL CRVFRKKGSA 180 AASTASPTAD ADDDDATTER ADDAAAGVRF IDFFARADAR RRRAASPVSS SCVTDASAEH 240 CREQETTSRN GGAAAGDASD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-39	2	179	8	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243244	0.0	AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618303.1	0.0	NAC domain-containing protein 83
Swissprot	Q9FY93	3e-52	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A0E0JA85	0.0	A0A0E0JA85_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QXV4	0.0	A0A0E0QXV4_ORYRU; Uncharacterized protein
TrEMBL	Q2QQZ6	0.0	Q2QQZ6_ORYSJ; No apical meristem protein, expressed
STRING	ORUFI10G07040.1	0.0	(Oryza rufipogon)
STRING	OS12T0477400-01	0.0	(Oryza sativa)
STRING	ONIVA12G11920.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6317	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-50	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]