PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09070.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 282aa    MW: 30649.3 Da    PI: 6.9962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000155678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  ONIVA12G09070.1 56 YTCSFCRREFRSAQALGGHMNVH 78
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-65383No hitNo description
PfamPF139121.8E-55679IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2195683IPR007087Zinc finger, C2H2
SMARTSM003550.00615678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MERMAKHYWA LWGAGVRSGW PAAAHGGGAE PSWEEKAFAQ DAAGHLGGCV WPPRSYTCSF  60
CRREFRSAQA LGGHMNVHRR DRARLRQCDD DDDDPIPPTV SICAPPPPPP PPPPLLPAAA  120
AAPDSPSPPS LLLQISSPKS TTADHHQNHQ QLQLQGTNSS PNSCIATIIK ESRNKARLFI  180
TTMPAPAPAT THDLGLGGGK DDDDSISISM EEIRRKRRRV DQPLTPTPSY SSERERRRED  240
DPAAADASNN KVIPSSSILV NQLAMDMVGR QEIDLELRLG ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135178229superman protein
2l1o_A2e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218RKRRR
2215219KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058690.0AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645557.10.0zinc finger protein 10
TrEMBLQ69L900.0Q69L90_ORYSJ; C2H2-type zinc finger protein-like protein
STRINGONIVA12G09070.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-22C2H2 family protein