PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G08230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 508aa MW: 54967.6 Da PI: 6.5579 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.4e-09 | 109 | 134 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ ++G C++G +CkF+H+ ONIVA12G08230.2 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134 5789*********************8 PP | |||||||
2 | zf-CCCH | 25.9 | 1.7e-08 | 219 | 241 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +e+C++++ G Ck+G Ck+ H ONIVA12G08230.2 219 QEECKYYSTPGGCKFGKACKYLH 241 699******************** PP | |||||||
3 | zf-CCCH | 34.6 | 3.1e-11 | 266 | 290 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Cky +CkF+H+ ONIVA12G08230.2 266 GEKECPYYMRTGSCKYATNCKFHHP 290 7899********************9 PP | |||||||
4 | zf-CCCH | 19.9 | 1.3e-06 | 413 | 439 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ ONIVA12G08230.2 413 PGQPECQHFVKSGFCKFRMKCKYHHPR 439 5789*********************96 PP | |||||||
5 | zf-CCCH | 23.8 | 7.9e-08 | 458 | 483 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ ONIVA12G08230.2 458 DQPVCTYYGRYGVCKFGPACAYNHPF 483 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0013 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.258 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-6 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-5 | 113 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 216 | 244 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-4 | 217 | 243 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-6 | 219 | 241 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 222 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.793 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 266 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 267 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 270 | 289 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 412 | 439 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 412 | 440 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0081 | 456 | 483 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 456 | 484 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 457 | 484 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 458 | 483 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL 60 PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF 120 GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD 180 ISPEVDSLII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL 240 HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP 300 QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP 360 EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH 420 FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN 480 HPFNFSPVPA AGPPLLPAQY PTPGNYTL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111498 | 0.0 | AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence. | |||
GenBank | AK121774 | 0.0 | AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620308.1 | 0.0 | zinc finger CCCH domain-containing protein 65 isoform X8 | ||||
Swissprot | Q2QTY2 | 0.0 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A0E0J8Y3 | 0.0 | A0A0E0J8Y3_ORYNI; Uncharacterized protein | ||||
STRING | OPUNC12G07750.1 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 1e-62 | C3H family protein |
Publications ? help Back to Top | |||
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