PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G04320.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 554aa    MW: 58627.2 Da    PI: 4.642
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G04320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.65e-23271611127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksgy 82 
                      lppG+ F+Pt ee +++yL++ ++gk++++ e+  ++ +d+y   P  L++        +   +w+f ++r+++++     +kr++r +++ g+
  ONIVA12G04320.1  27 LPPGVYFNPTREEAMHNYLNRWIAGKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNYVYKWFFLCHRKRQSSrrttGNKRAERvVAAGGR 120
                      79*************************777664459999**********85345542222455999*99999988744423458888667799* PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      Wk     k+vl  +g   g +++L fy  ++++++kt+W+m+ey+
  ONIVA12G04320.1 121 WKVEQG-KKVLG-GGGGGGERDSLGFY--SSNSTKKTSWIMEEYT 161
                      **6544.68888.88899*********..556667*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-2323185IPR003441NAC domain
PROSITE profilePS5100529.17527185IPR003441NAC domain
PfamPF023653.1E-1528161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDVDPPPPLP PPPPPPATPQ QNTAVELPPG VYFNPTREEA MHNYLNRWIA GKTIPEMEAG  60
FVAGADVYGD GPDALRRRHR PGYWCNYVYK WFFLCHRKRQ SSRRTTGNKR AERVVAAGGR  120
WKVEQGKKVL GGGGGGGERD SLGFYSSNST KKTSWIMEEY TSSAADGAAA AEDRMEPVLC  180
KIYLSPRAPA SEKRALFGED GVAVGPDGRK RNARVTVLAT LFDDVAALLG QPVAAAPPLP  240
APGDPLGHGH FDDVAARFGQ VAVAALPASG DLGHGYFDDD AAALLGQVAM APAPAPGHHQ  300
QGYVVAEALP ESGYVGHYHH DGHLAQAAAA PEQDHYLGYH SHDAHVAEAT PEQGYHDDAH  360
VAVAPAPEQG DLRHDQGHLA AALTPEECGE IVGAYEFHPE MVQMLSMGFA VPDEQLVPQL  420
LDPTGGGYDM ASSATAAAAA APTPRIRPNA AEAMAATATA ETMPPPLDAV AAELSAPPRG  480
LPPELAFRAL PSVQQEPSCD DDDNFGEVVA EAMPPLIGEN AGVDAGSDEP LPDLAGIMTE  540
LDFGHDFFSN QHRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0J7G40.0A0A0E0J7G4_ORYNI; Uncharacterized protein
TrEMBLA2ZIL80.0A2ZIL8_ORYSI; Uncharacterized protein
STRINGONIVA12G04320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.15e-13NAC domain containing protein 63